MmuEX0004897 @ mm9
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126624525-126631765:-
Coord C1 exon
chr3:126631583-126631765
Coord A exon
chr3:126629721-126629812
Coord C2 exon
chr3:126624525-126626889
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTTCTTACCTCAGGCT
3' ss Score
8.7
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
Exon sequences
Seq C1 exon
GTGACTTTGTCTGAACCCAGCGTTTTGTCCAGTACCTCACAGTTTCAGGCCGAGCCAGTAGAAGGCCGTAGAGTCAGCAAAGTTGTTAAAACAACCATGGTACACGGAGAACGGATGGAGAAGAGTCTTGGGGACTCTAGCTTAGCCACTGACCTTCCTTCAGCCAAAGATGACTTTGAAGAG
Seq A exon
GCTTTGGGGTACACAGGTAGCCATATGAACGTCCACTTGCCCAGTTTAGTAGAGAATGAAATCCTGAAGGAGGATGGATCAATAATTAAGAG
Seq C2 exon
GACAACAATGAGTAAAGCCAGGACACAGAGGAGGGCTGTGGTGAAGGACCAGCAGGGGAAACACATCACCTTGGAGCACCTGGAGGATGTTCCCGGAGCACTGGACCAAGACGACCTCCAGCGAGATCTCCAGCAACTCCTTCGGCACTTCTGCAAGGAGAACACAAAGCAAGAGGCCAAATGAGGAGCTGCCCAGTTCTCACCAGAAACCACAAACCCACTCAATATGCAACTTCCCATTTCTGCGCAGGAGTGACTGAAGTGGCCTAATTACTGGGACCCAGTGACACTTCCACTCTCAGCAAACACACAGCATCTACTTTTCCTTCTTTCTCCCTGCCCCTCTCTAACTATAAGCTAATTTGTGACCAAAGATAGCATCCTTCCTTCCGGATGCTGTATCCACTATTTTGAGCATCCGTGCTAACCTGGGAACTGGCATCTCTATTGTTTGCTTCTGCTCAAGCTCCATGAAACTCCATGAATCAGAAGAACTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'67-65,'67-64,68-65
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=0.484 C2=0.792
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGACTCTAGCTTAGCCAC
R:
GATCTCGCTGGAGGTCGTCTT
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: