RnoEX0009356 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231226949-231231979:-
Coord C1 exon
chr2:231231839-231231979
Coord A exon
chr2:231229622-231229713
Coord C2 exon
chr2:231226949-231226963
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTCTTACCTCAGGCT
3' ss Score
9.18
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
Exon sequences
Seq C1 exon
TTTCAGGCGGAACCAGTAGAAGGCCGTAGAGTCAGCAAAGTTGTTAAAACAACAATGGTTCATGGAGAACGGATGGAGAAGAGCCTGGGGGATTCTAGCTTAGCCACTGACCTTCCTTCAGCCAAAGAGGACTTTGAAGAG
Seq A exon
GCTTTGGGTTACACAGGTAGCCACATGAAAGTCCACTTGCCCAGTTTAGTAGAGAATGAAATCCTGAAGGAGGATGGATCAATAATTAAGAG
Seq C2 exon
GACAACAATGAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076_MULTIEX1-2/2=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.194 C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000080637fB1063
Main Skipping Isoform:
ENSRNOT00000080637fB1062
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]