DreEX0013088 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57583734-57589964:-
Coord C1 exon
chr7:57589776-57589964
Coord A exon
chr7:57589510-57589601
Coord C2 exon
chr7:57583734-57585094
Length
92 bp
Sequences
Splice sites
3' ss Seq
TATTTCTCTCATATGTCTAGGCT
3' ss Score
6.59
5' ss Seq
AAGGTCTGG
5' ss Score
3.93
Exon sequences
Seq C1 exon
GTGACCTTCTCTGAACCTCTCTCTTATGCTGGGGCGACATCATCTAAATTTGAAGAAGAGCCTGTTCAAGGTCGGAAGGTCAGCAAGGTTGTCAAAACCATGGTAGTGCAAGGTGATCGAATGGAAAAACTCATCGGAGACCCTTCTCTCTCATCTGATCTCCCATCAGCCAAAGACGACTTTGAAAAG
Seq A exon
GCTTTGAGTTATGTAGAAGGCTTTGAGAAAGTGCTTCTGCCTCATTTAGTTGAGAAAGAGACGGTGAAAGAGGATGGATCAGTGGTCAGAAG
Seq C2 exon
GACCCGCATGCATAAGACGCGCACTCAGAAGCGGACAGTAGTGAAGGATGGAGAGGCCAAACAAACCCACCTAGAACGACTGGAGGACACGGCGGAAAGCCTGCGACCCGATGACCTGCAGCAGCACCTGCATCAGCTGCTCCAGCGCTACTGTACGCCAGAGCCACATCCACCCGCAGGACAGCAGGACAAACCACAACCTCCACCTGCTGGAAGACCAGACGCTTGATACAATATTCTGCAAACCTGTCTGTAGCCTTTTTTAAAACACAAGAATTTATCCTTCGCTCGGCAACCAGATGCCATTTTATCTTCCTGATCATCATTGTTATTATTTATTGCTCATTCTTTGCAAATAATGGAAACATTTAAAATGCTTCATGGCTGAATGTCTTTGTTTGTTTTTCTCATTTTGTGACCAAAGATAGTGTTCTTCTGAATTGCTGAGTGAATCGTATGAAACATTGATGTTTTCTTTTCTTTCTTTTGTTTTTTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=0.387 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGTCGGAAGGTCAGCAAG
R:
TTGGCCTCTCCATCCTTCACT
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]