GgaEX0018083 @ galGal4
Exon Skipping
Gene
ENSGALG00000012044 | chAnk2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NG08]
Coordinates
chr4:56333065-56336748:-
Coord C1 exon
chr4:56336566-56336748
Coord A exon
chr4:56335462-56335553
Coord C2 exon
chr4:56333065-56333997
Length
92 bp
Sequences
Splice sites
3' ss Seq
AGTTTATGTTTTAATTTGAGGCT
3' ss Score
3.61
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GTGACTTTGTCTGAACCTGGTGTTTTGCCCAGTGCCTCCAATTTCCAGTCTGAGCCAGTGGAAGGCCGCAAGGTCAGCAAAGTCATAAAAACTACTGTAGTGCAAGGAGAGAGAATGGAGAAACACCTGGGGGATGCTAGCTTAGCTACTGATCTTCCGTCGGCCAAAGAGGACTTTGAAGAG
Seq A exon
GCTTTGAGCTATACAGGCAACCAAATTAAAATCCAACTCCCTGCATTAGTAGAGAAGGAGATCATGAAGGAGGATGGATCAATTATTAAAAG
Seq C2 exon
GACAACACTAAGTAAAGCCAGCACACAGAAGAGGACTGTGATGAAGGATCGGTATGGAAAGCATGTTCACATAGAAGAGCTGGATGACACACCAGAAGCGCTACCACAGGATGACCTCCAGCATGACCTTCAGCAGCTTCTTAGACACTTCTGCAAAGAGGACTGGAAACAGGAGGCAAAATAAGAAGCTGTCACCCCTCAACATGTCCATCCAGTATGCAGCGTTCATCTTTTCTAGGTGTAGACATTATGACCTACATAATCACTGGAAGACACTGCCATTTCTACTTGTGCAGATGCAGTGAATTCATTTTTTTTTCCCCCCTGTATTTGATTTCAGGTTTTTGTTATTTTTTACCCTGTAAGCTAATTTGTGACCAAAGATAGCATCCTTCATTCGGGATGATTTATCCACCAATTGTCGTCTTTGTGCTGTACTGGGACCTTGTCAGCATCGCCACTTTTTGCCGGTCCTTTGCTTCTGCACTAGCTTCCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000019661fB2134
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTCCGTCGGCCAAAGAG
R:
CTGCTGAAGGTCATGCTGGAG
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]