HsaEX0004140 @ hg38
Exon Skipping
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2 [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr4:113374732-113383740:+
Coord C1 exon
chr4:113374732-113374946
Coord A exon
chr4:113378090-113378181
Coord C2 exon
chr4:113381457-113383740
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCTTCTTACTTCAGGCT
3' ss Score
8.97
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
ACATTGTCTATTGTGTGTCCTTCGATCATTAGGTCACTTTGTGTGAGCCCAGCATTTTGTCCAGTACCTCACAATTTCAGGCTGAGCCAGTGGAAGGCCGTAGAGTCAGCAAAGTTGTTAAAACAACTGTGGTACTTGGAGAGAGGATGGAGAAACATCTGGGGGATTCTAGTTTAGCCACTGATCTTCCTTCAGCCAAAGATGACTTTGAAGAG
Seq A exon
GCTTTGAGTTACACAGGTAGCCACATGAAAGTCCACTTACCCAGTTTAGTAGAGAATGAAATCCTGAAAGAGGATGGATCAATAATTAAAAG
Seq C2 exon
GACAACAATGAGTAAAGCCATCACACAGAAGAGGGCTGTGGTGAAGGACCAGCATGGAAAACGCATTGACTTGGAGCACCTGGAGGATGTACCAGAAGCACTAGACCAGGACGACCTCCAGCGCGATCTCCAGCAGCTCCTTCGGCATTTCTGCAAGGAGGACTTGAAGCAAGAGGCCAAGTGAGGGGCTGCCCAGTTCTCACACCAGAAACCACACATTCACTCAATATGCAGCTTCCTGTTTCAGTAGGGGAGTGACCTAACTGGCCTAATTAATGGGATACCCCGACATTTCCACTGTTAGCAAATATACGGCATTTTGCTTTAGTTTTCCCCCATCCTCTTTAACTATAAAGCTAATTTGTGACCAAAGATGGCATCCTTCATACTGGATGCTGTATCCAATACTTTGTTGTGTCTGTGCTAACCTGGGAACTGGCCACCTCCATTGTTCTTTGCTTCTGCACAAGATCCATGAAAATCCATTGATCAGAAGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362_MULTIEX2-5/5=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.578 A=0.194 C2=0.623
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAAGGCCGTAGAGTCAG
R:
TTCACCACAGCCCTCTTCTGT
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development