BtaEX0003413 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13381111-13389083:-
Coord C1 exon
chr6:13388901-13389083
Coord A exon
chr6:13387412-13387503
Coord C2 exon
chr6:13381111-13383858
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTTCCTTATTTCAGGCT
3' ss Score
10.72
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GTAACTTTGTCTGAGCCCAGCATTCTGTCCAGTACCTCACAATTTCAGGCTGAACCAGTGGAAGGCCGTAGAGTCAGCAAAGTTGTTAAGACAACTGTGGTCCATGGTGAGAGGATGGAGAAACATCTGGGGGATTCTAGTTTAGCCACTGATCTTCCTTCAGCCAAAGATGACTTTGAAGAG
Seq A exon
GCTTTGAGTTACACAGGTAGCCACATGAAAGTCTACTCCCCCAGTTTAGTAGAGAATGAAGTCCTGAAGGAGGATGGATCAATAATTAGAAG
Seq C2 exon
GACGACAATGAGTAAAGCTAGAACCCAGAAGAGGGCTGTGGTGAAGGACCAGCAGGGAAAACGCATTTACTTGGAGCACCTGGAGGATGTCCCAGAAGCGCTAGACCAGGACGACCTCCAGCACGACCTCCAGCAACTCCTTCGGCATTTCTGCAAGGAGGACTCGAAGCAAGAGGCCCAGTGAGGGGCTGCCCAATTCTCACACCAGAAACCACACCTTCACTCAATATGCAACGTCCCGTTTCATTAGAGGAGTGACCTCACTGGCCTGATTAATGGGATACCCTGACATTTCACTTTCAGCAAACATGCGGCATTTGGTTTGAGTTTTCCCCCATCCTCTTTAACTGTAAGCTAATTTGTGACCAAAGATAGCATCCCTCACTCTGGATGCTGTATCCACTGCTCTGTTGTGTCTGTGCTGACCTGGGACCTGGCCACCTCCGTTGTTCTTCTTGGCTTCTGCACAAGCTCCATGAAAATCCATTCAACGGGAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392_MULTIEX1-4/4=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCATGGTGAGAGGATGGA
R:
CTTCTGGGACATCCTCCAGGT
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development