MmuEX0004897 @ mm10
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126921612-126928847:-
Coord C1 exon
chr3:126928665-126928847
Coord A exon
chr3:126926803-126926894
Coord C2 exon
chr3:126921612-126923971
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTTCTTACCTCAGGCT
3' ss Score
8.7
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
Exon sequences
Seq C1 exon
GTGACTTTGTCTGAACCCAGCGTTTTGTCCAGTACCTCACAGTTTCAGGCCGAGCCAGTAGAAGGCCGTAGAGTCAGCAAAGTTGTTAAAACAACCATGGTACACGGAGAACGGATGGAGAAGAGTCTTGGGGACTCTAGCTTAGCCACTGACCTTCCTTCAGCCAAAGATGACTTTGAAGAG
Seq A exon
GCTTTGGGGTACACAGGTAGCCATATGAACGTCCACTTGCCCAGTTTAGTAGAGAATGAAATCCTGAAGGAGGATGGATCAATAATTAAGAG
Seq C2 exon
GACAACAATGAGTAAAGCCAGGACACAGAGGAGGGCTGTGGTGAAGGACCAGCAGGGGAAACACATCACCTTGGAGCACCTGGAGGATGTTCCCGGAGCACTGGACCAAGACGACCTCCAGCGAGATCTCCAGCAACTCCTTCGGCACTTCTGCAAGGAGAACACAAAGCAAGAGGCCAAATGAGGAGCTGCCCAGTTCTCACCAGAAACCACAAACCCACTCAATATGCAACTTCCCATTTCTGCGCAGGAGTGACTGAAGTGGCCTAATTACTGGGACCCAGTGACACTTCCACTCTCAGCAAACACACAGCATCTACTTTTCCTTCTTTCTCCCTGCCCCTCTCTAACTATAAGCTAATTTGTGACCAAAGATAGCATCCTTCCTTCCGGATGCTGTATCCACTATTTTGAGCATCCGTGCTAACCTGGGAACTGGCATCTCTATTGTTTGCTTCTGCTCAAGCTCCATGAAACTCCATGAATCAGAAGAACTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826_MULTIEX3-2/2=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=0.548 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF046497=VlpA_repeat=PD(33.3=9.7)
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGACTCTAGCTTAGCCAC
R:
GATCTCGCTGGAGGTCGTCTT
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types