MmuEX0004896 @ mm10
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126921612-126929886:-
Coord C1 exon
chr3:126929722-126929886
Coord A exon
chr3:126928665-126928847
Coord C2 exon
chr3:126921612-126923971
Length
183 bp
Sequences
Splice sites
3' ss Seq
ACATGTCCTTCATTCATTAGGTG
3' ss Score
8.23
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GTTACCCGGAAAATCATTAGGCGGTACGTTTCCTCTGATGGCACAGAGAAGGAGGAGGTTACCATGCAGGGAATGCCTCAGGAGCCAGTCAACATTGAGGATGGGGACAATTATTCCAAAGTGATAAAGCGCGTGGTATTGAAGAGTGACACCCAGCAGTCAGAG
Seq A exon
GTGACTTTGTCTGAACCCAGCGTTTTGTCCAGTACCTCACAGTTTCAGGCCGAGCCAGTAGAAGGCCGTAGAGTCAGCAAAGTTGTTAAAACAACCATGGTACACGGAGAACGGATGGAGAAGAGTCTTGGGGACTCTAGCTTAGCCACTGACCTTCCTTCAGCCAAAGATGACTTTGAAGAG
Seq C2 exon
GACAACAATGAGTAAAGCCAGGACACAGAGGAGGGCTGTGGTGAAGGACCAGCAGGGGAAACACATCACCTTGGAGCACCTGGAGGATGTTCCCGGAGCACTGGACCAAGACGACCTCCAGCGAGATCTCCAGCAACTCCTTCGGCACTTCTGCAAGGAGAACACAAAGCAAGAGGCCAAATGAGGAGCTGCCCAGTTCTCACCAGAAACCACAAACCCACTCAATATGCAACTTCCCATTTCTGCGCAGGAGTGACTGAAGTGGCCTAATTACTGGGACCCAGTGACACTTCCACTCTCAGCAAACACACAGCATCTACTTTTCCTTCTTTCTCCCTGCCCCTCTCTAACTATAAGCTAATTTGTGACCAAAGATAGCATCCTTCCTTCCGGATGCTGTATCCACTATTTTGAGCATCCGTGCTAACCTGGGAACTGGCATCTCTATTGTTTGCTTCTGCTCAAGCTCCATGAAACTCCATGAATCAGAAGAACTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826_MULTIEX3-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=0.984 C2=1.000
Domain overlap (PFAM):
C1:
PF046497=VlpA_repeat=PU(55.6=16.1)
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCGTGGTATTGAAGAGTGA
R:
GGTTTCTGGTGAGAACTGGGC
Band lengths:
248-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types