MmuINT0015115 @ mm10
Intron Retention
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126928665-126929886:-
Coord C1 exon
chr3:126929722-126929886
Coord A exon
chr3:126928848-126929721
Coord C2 exon
chr3:126928665-126928847
Length
874 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACATGTCCTTCATTCATTAGGTG
3' ss Score
8.23
Exon sequences
Seq C1 exon
GTTACCCGGAAAATCATTAGGCGGTACGTTTCCTCTGATGGCACAGAGAAGGAGGAGGTTACCATGCAGGGAATGCCTCAGGAGCCAGTCAACATTGAGGATGGGGACAATTATTCCAAAGTGATAAAGCGCGTGGTATTGAAGAGTGACACCCAGCAGTCAGAG
Seq A exon
GTGAGGCCACCCAGCTCCGCAGAGTTTATTGCACAGAGAAAGTTAAAACATAGGCCAAATAAATAAATAAATAAACCCCAAAAGGTGTTTATTCCTACTGAATCTCAATTTCATGTGGCCATTATACTCATTGTCTTTGTTTGGTTCTTCTCATTTCTATGTTGTATTTACTTCATACTTGATTACAGTACAAATCCAAAGTCAAATTTTAAGAGAATAAAATCCTTTTTTTTTTCTGGCCAGATGTGTGTCATGAAGAGACGGTGTCTAAGTGTACTGCAGTGCTTAGGCCCTGTTGGCACACCAGCCTTCCGAAGGTCACGTTAGACATGTGTTTGATACTCAGACTTCAGCATTTCAGGGTCATTACAATTATAATCTGAAACTCCATGCTTTATCATTTGTCACTTTCTGTTTTGCTTCCTTGTTGGAAAGCAAAACTTTCCAAAACTCCACCGCCCACACTGGTTCTCATAGACACACAATTTGAAAATCTTACTGTTCTGCACTCATTCATATCGTAAGAATCGTATGATTATGTACCCGAAACCATCTAGCCATCTACCTTGTCTCCCCTAGCTTTTTATGCTTTTTCCTTCAGGGGTTGAGTTGGTCTTCATGTTGCCAAAGAAATAATTGTGGAGAAGAGCACCTATCAGCCTTTTAGAAATGTGGCTGGTAAGGTTTTATTCAAGTGACCCACTAACCATCTCAGCAACCCACACTCAGATAGACCAATTGCTCTCTTACTCCTAATTACCACTTTTCAGAAAGCCAGTATTATAACCACTTTATTTCACAGCACAGAAAATGGCATCGTTTGTTCCATTTTTATCAGTTGGGAATTGTCTGTCACATGTCCTTCATTCATTAG
Seq C2 exon
GTGACTTTGTCTGAACCCAGCGTTTTGTCCAGTACCTCACAGTTTCAGGCCGAGCCAGTAGAAGGCCGTAGAGTCAGCAAAGTTGTTAAAACAACCATGGTACACGGAGAACGGATGGAGAAGAGTCTTGGGGACTCTAGCTTAGCCACTGACCTTCCTTCAGCCAAAGATGACTTTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826:ENSMUST00000044443:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=NA C2=0.984
Domain overlap (PFAM):
C1:
PF046497=VlpA_repeat=PU(55.6=16.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGGAAAATCATTAGGCGG
R:
TTCAAAGTCATCTTTGGCTGAAGGA
Band lengths:
342-1216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types