GgaINT0076259 @ galGal4
Intron Retention
Gene
ENSGALG00000012044 | chAnk2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NG08]
Coordinates
chr4:56336566-56338738:-
Coord C1 exon
chr4:56338574-56338738
Coord A exon
chr4:56336749-56338573
Coord C2 exon
chr4:56336566-56336748
Length
1825 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TCAATTTTCTAACCTTCCAGGTG
3' ss Score
10.24
Exon sequences
Seq C1 exon
GTCACTAGAAAGATCATCCGGCGATACGTTTCTCCAGATGGCACTGAAAAAGAAGATATCATTATGCAAGGAACACCACAAAAACCTGTCACAGTTGAAGAAGGAGACGGCTATTCCAAAGTTGTAAAACGAGTCGTGCTGAAGAGTGACAGTGAACAGTCAGAG
Seq A exon
GTGAGATCTACTTTGCTTGTTATGGTACAAAAGTGTAGTACACCTTCTAAGAGCATACTTAGAATCAGAATTTTTTGCATTGGAAGGGACCTTTAAAGATCATCTAGTCCAAGTGCCCCATAATGAAAAGGGACACCCACAGCTCCATCAGGTGCTCAGAGCCCCTCCAGCCTGACCTTGAATGTCTCCAGGGATGGGCATCCACCACCTTATGAGCAAGCTGTGCCACTGCCTCACCACCCTCCCTGTAAAACATTTCTTCCTTATATCCGGTCTAAACCTACCCTCTTAGTTTGAAGCTATTTCACTTTGTCCTGTCACCACAGATTCTGCTGCAAAGCCTGTCCCCTTCTTTCTTACAGCCCCTTCAGATACTGAAAGGCCACTCTCACGAATCCCCCAGAGCCACCACCTTCTCCAAGCTGAACAGCCCCAGCTCTCTTAGCCTGTAGGGGAGTTGTTCCATTGCTGGGATCATTTTTTGTGGCTTTCCTCTGGACACAGGTTCAGAGCTACATTCTAACTATGACAATAACATTCAGTTCTGGATGATTTTTTGAAAAGTTCCCCTGCAGATGGAAATACCTCCAAAAAAAAAAAAAAAAAAAAAGAGAGAGAAAAGGAGAGGAGAGGATGGAGGAAGGGGATAGTTTTCTTTGAAAACAAGATAGAAATTCTATGATTTATGAGAAATACTAATCTCAACGAAAGCAGTTTTATACCAAGTTGACATATAGATAAGCGGAAAAGGTTTGCTATTATGTCTCTTACTCTAATAAGGAAATTAGTGAATACTGAAATTAAATGACCTGATGTTCTCCAGATTTGTGCAACTAAGCCACCCTATGACTATACCCGTTGCATTAGGTTTAAGTTACTGTAACAAAAGGGTTATTTTTATGCAAACTGTTTCAATGCCAGGTAGTTAAAAAAAAAAAAGGAAAAAAAACAACCTGAAAAGGTTCTCAGTTTATCTTCTGCTTTAGGTCACCATGCAGCCTTGTAGATGGTTATACTAGCACAATTAAGGTAGCAACAGAGGGGCAGAAGCCAATAATAGGGGTTGATTTCAGTAGTACTGCAGTTGAAAGCACATGTAACTAATGACCATTAGAAAAGCTAAGGAAGTGATTGGTGTTCTCTTTCACCAGAAGGAATCATCAAAATTAATTCCCTAGGAATTAGTAATTCCTTAGGAGTAAGGTAACAGGGAAAAGTCATTTATTTTAGTTAGCTTACCATACTATAGATCTACTCCTTACCCTGTGGAGACCATATAAACTAAATTTATATTTTGCCAAACCAAATCATATTTTTCACTTCCATCTGGTATTCTGAAATTCCAGTCCATTGCTCCCGTGAGTTCCTTGGTTTATACATGTGTTACTCATCTCTCAGAAGATTATGGTAATTTTATGATATGAACTGATACCAATACGACCTGAGTGAATACAGCAAGGATTCGCAGCAAGAGGCCCACTTGTTAATTGCTGTTGTTCCAAAGTGACTGGAATAAGTGTGGTGTGGTAGAAGGCACCTTTAACCTAGTACAGGTTCCAGCAACAGTTTTCACCTTGTTAGCATAAAGTTTCCCAACAGAACAAATTATTCAGGGCTGTTCCTGCTCCCCGAGCAGGTACATATTTACAATGTCTTTTCCAGAGTTATAAAAAAAGGTAATAAAATGTACACCAATAATGTAGAAAGTAAAACATTTCTTGTTCTCTATGTCAGTGATTAAGAAACAATGGTAGAAGAACTAAAAGCTTAGCTAGCGTCTGTTACGTAAATCATATCCAACCTAATCAATTTTCTAACCTTCCAG
Seq C2 exon
GTGACTTTGTCTGAACCTGGTGTTTTGCCCAGTGCCTCCAATTTCCAGTCTGAGCCAGTGGAAGGCCGCAAGGTCAGCAAAGTCATAAAAACTACTGTAGTGCAAGGAGAGAGAATGGAGAAACACCTGGGGGATGCTAGCTTAGCTACTGATCTTCCGTCGGCCAAAGAGGACTTTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044:ENSGALT00000019661:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.834 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTAGAAAGATCATCCGGCG
R:
AAAGTCCTCTTTGGCCGACG
Band lengths:
342-2167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]