BtaINT0017948 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13389038-13390247:-
Coord C1 exon
chr6:13390083-13390247
Coord A exon
chr6:13389084-13390082
Coord C2 exon
chr6:13389038-13389083
Length
999 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GTGTGTCCTTCATTCATCAGGTA
3' ss Score
9.55
Exon sequences
Seq C1 exon
GTTACTAGGAAAATCATTAGGCGGTTCATCTCCTCTGACGGCACAGAGAAAGAGGAGATTACGATGCAGGGAGCACCACAGGATTCTATCAGCGTTGATGAAGGGGATGGTTATTCCAAAGTCATAAAGCGCATTGTATTGAAGAGTGACACCGAGCAGTCAGAG
Seq A exon
GTGAGCCCACAACGTCTCCAGAACTGACTTTATGGAGAGGTGTGAAATAGAGCTCACAAGAGATGGACGAGATAGTTCATTCCTGCTGGCCTCACTTCTCCCCTTTATAAGGCAGTCTGTGTTTAGTTACACGTTGATTTTTTTTTGTCTTTGTGATTTGGAAAATTTTTAAAGAACCACGAGGCAGATTTGTAACCACTGTACTCATTGTCTTTGGTCCTTTTCATTTCCACTTTCTCATTAATTCAATTGACAGCAGCAGACATCCAAAAGTCAAAATTTAAAAGACAGCAATCCTATTAGCTGGCAAGTGGTAGATTCTGAAAAAAATCTTGTGCCAAGGCACTGTGGTGCCGTGCCCAGTCAGTCACCGCAGCCTTCTCTAGGGCACCTTTGATAAATACTGGATTTCTAAACTTTTGCATTTCAGAGTCACTGAAACCAGGATCCAGAAACTCCCTTGATTTGTAGCTTTATTTCTTCCTGTTTTACTTCCCTCTTTCAGAAGCATATTTACTCTCTTTGACATGTAATTTGGGACATTCTCACCATCTTGCATCCATTCACATCCTCAAAATTTTATTATTACACACACGAGGTTCTCTAAACATCTACATTTTCAGTTTCTCATGTCTCTGTAAGTTCCTTCTTTGATGGTTAATTTTGTCTTCATAATGTCAGAACAACCCATTTACACTTGGGAAAAGAGAGTTCATCTGCAGGGCACTGGGTGCATTGCACTGAGCAGCCAGTTCCTCAGCCATGAAACTTCCTGACCAACCTCTGTCCAAGCAATGAATTAAGTGGCTGATTTGGTGCTGTGTCTGTATAGTCATTACATAGATGTTACCAATTGATCATAGTCTTTTGCTGCTTCTTGTTGACAAAATGCTGTCTTTAAGATACACCATTGTAGCATGTGGGTTTTGGCATAGAAAAGTTCATCACTGTTACATCTTGGTCATCGAAACTGTATACTGTGTGTCCTTCATTCATCAG
Seq C2 exon
GTAACTTTGTCTGAGCCCAGCATTCTGTCCAGTACCTCACAATTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392:ENSBTAT00000003097:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACTAGGAAAATCATTAGGCGGT
R:
TGTGAGGTACTGGACAGAATGC
Band lengths:
206-1205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]