DreINT0007764 @ danRer10
Intron Retention
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13465191-13466049:+
Coord C1 exon
chr1:13465191-13465355
Coord A exon
chr1:13465356-13465875
Coord C2 exon
chr1:13465876-13466049
Length
520 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
TGTATCTTGTTTAACTTCAGGTG
3' ss Score
9.57
Exon sequences
Seq C1 exon
GTGACCAGGAAGGTGATTAGACGATGTGTGTCCTCTGATGGGGTGGAGACAGAGCAGTTGAGGGTGGAGGGCTCTGCTCAGCAGCCTGTCCATGTGGCTCCAGGGGACAGTTACTCCAAAGTAATGAAGAGGACAGTACTGAAGAGCGAAGGACATGAAACAGAG
Seq A exon
GTGTGTAATTTTGCAGTGGCCTAAAACAATTATTTATTCATTCATTATTTTCCTTTGGCTTAGTCTACATTTTAAATGTCAACACAGTGTAAAGAACCAGCAACTATTCCAGCATATGTTTTACACAGCGGATGCCCTTCCAGCCGTAGCCCAGTACTAGAAAACAACCTTACACACTCACTCACACACTCATACACTATGACCAATTTAGTTAATAGAATTCACCCATGGCACATATCTTTGGACTGTGGGGGAAAGCAGAGCAAACACACCGAAAAAAAACACACAAACACAGAAAGAACATGCCAACTGGCCCAGCTGGGACTCGAAACGGCAACCTTCTTGCTGTGTGAGGTGGCAGTGCTAATCACTGAGCCACCATGCCACCCTAACACAACGATATGTACAGTAATCAAAATAAGCCAATTTGTTTCAATGTCATGTACTTACTTAAGCAATGAAAATGTTGGCATTTCAACAGTTTTGATCAATTAAAGATGTGTATCTTGTTTAACTTCAG
Seq C2 exon
GTGACTTTCCATGAGAAAGACAGCATTTCGGCTTCAAGGGGGGAGTCTGCCGCTGGTCAAGAAGTCAGACAGATGGTCCAGACAACAGTGGTACATGGAGAACAGTTGGAAAAGCATGAGGGGAATCCATTCCTTGCCAGAGACTTGCCCTCTGCTCGGGATGACTTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026:ENSDART00000021693:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.879
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAAGGTGATTAGACGATGTG
R:
CTGGGTGAAGTCATCCCGAGC
Band lengths:
335-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]