GgaINT0076259 @ galGal3
Intron Retention
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58291741-58293913:-
Coord C1 exon
chr4:58293749-58293913
Coord A exon
chr4:58291924-58293748
Coord C2 exon
chr4:58291741-58291923
Length
1825 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TCAATTTTCTAACCTTCCAGGTG
3' ss Score
10.24
Exon sequences
Seq C1 exon
GTCACTAGAAAGATCATCCGGCGATACGTTTCTCCAGATGGCACTGAAAAAGAAGATATCATTATGCAAGGAACACCACAAAAACCTGTCACAGTTGAAGAAGGAGACGGCTATTCCAAAGTTGTAAAACGAGTCGTGCTGAAGAGTGACAGTGAACAGTCAGAG
Seq A exon
GTGAGATCTACTTTGCTTGTTATGGTACAAAAGTGTAGTACACCTTCTAAGAGCATACTTAGAATCAGAATTTTTTGCATTGGAAGGGACCTTTAAAGATCATCTAGTCCAAGTGCCCCATAATGAAAAGGGACACCCACAGCTCCATCAGGTGCTCAGAGCCCCTCCAGCCTGACCTTGAATGTCTCCAGGGATGGGCATCCACCACCTTATGAGCAAGCTGTGCCACTGCCTCACCACCCTCCCTGTAAAACATTTCTTCCTTATATCCGGTCTAAACCTACCCTCTTAGTTTGAAGCTATTTCACTTTGTCCTGTCACCACAGATTCTGCTGCAAAGCCTGTCCCCTTCTTTCTTACAGCCCCTTCAGATACTGAAAGGCCACTCTCACGAATCCCCCAGAGCCACCACCTTCTCCAAGCTGAACAGCCCCAGCTCTCTTAGCCTGTAGGGGAGTTGTTCCATTGCTGGGATCATTTTTTGTGGCTTTCCTCTGGACACAGGTTCAGAGCTACATTCTAACTATGACAATAACATTCAGTTCTGGATGATTTTTTGAAAAGTTCCCCTGCAGATGGAAATACCTCCAAAAAAAAAAAAAAAAAAAAAGAGAGAGAAAAGGAGAGGAGAGGATGGAGGAAGGGGATAGTTTTCTTTGAAAACAAGATAGAAATTCTATGATTTATGAGAAATACTAATCTCAACGAAAGCAGTTTTATACCAAGTTGACATATAGATAAGCGGAAAAGGTTTGCTATTATGTCTCTTACTCTAATAAGGAAATTAGTGAATACTGAAATTAAATGACCTGATGTTCTCCAGATTTGTGCAACTAAGCCACCCTATGACTATACCCGTTGCATTAGGTTTAAGTTACTGTAACAAAAGGGTTATTTTTATGCAAACTGTTTCAATGCCAGGTAGTTAAAAAAAAAAAAGGAAAAAAAACAACCTGAAAAGGTTCTCAGTTTATCTTCTGCTTTAGGTCACCATGCAGCCTTGTAGATGGTTATACTAGCACAATTAAGGTAGCAACAGAGGGGCAGAAGCCAATAATAGGGGTTGATTTCAGTAGTACTGCAGTTGAAAGCACATGTAACTAATGACCATTAGAAAAGCTAAGGAAGTGATTGGTGTTCTCTTTCACCAGAAGGAATCATCAAAATTAATTCCCTAGGAATTAGTAATTCCTTAGGAGTAAGGTAACAGGGAAAAGTCATTTATTTTAGTTAGCTTACCATACTATAGATCTACTCCTTACCCTGTGGAGACCATATAAACTAAATTTATATTTTGCCAAACCAAATCATATTTTTCACTTCCATCTGGTATTCTGAAATTCCAGTCCATTGCTCCCGTGAGTTCCTTGGTTTATACATGTGTTACTCATCTCTCAGAAGATTATGGTAATTTTATGATATGAACTGATACCAATACGACCTGAGTGAATACAGCAAGGATTCGCAGCAAGAGGCCCACTTGTTAATTGCTGTTGTTCCAAAGTGACTGGAATAAGTGTGGTGTGGTAGAAGGCACCTTTAACCTAGTACAGGTTCCAGCAACAGTTTTCACCTTGTTAGCATAAAGTTTCCCAACAGAACAAATTATTCAGGGCTGTTCCTGCTCCCCGAGCAGGTACATATTTACAATGTCTTTTCCAGAGTTATAAAAAAAGGTAATAAAATGTACACCAATAATGTAGAAAGTAAAACATTTCTTGTTCTCTATGTCAGTGATTAAGAAACAATGGTAGAAGAACTAAAAGCTTAGCTAGCGTCTGTTACGTAAATCATATCCAACCTAATCAATTTTCTAACCTTCCAG
Seq C2 exon
GTGACTTTGTCTGAACCTGGTGTTTTGCCCAGTGCCTCCAATTTCCAGTCTGAGCCAGTGGAAGGCCGCAAGGTCAGCAAAGTCATAAAAACTACTGTAGTGCAAGGAGAGAGAATGGAGAAACACCTGGGGGATGCTAGCTTAGCTACTGATCTTCCGTCGGCCAAAGAGGACTTTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044:ENSGALT00000019661:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTAGAAAGATCATCCGGCG
R:
AAAGTCCTCTTTGGCCGACG
Band lengths:
342-2167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]