MmuINT0015116 @ mm9
Intron Retention
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126624525-126631765:-
Coord C1 exon
chr3:126631583-126631765
Coord A exon
chr3:126626890-126631582
Coord C2 exon
chr3:126624525-126626889
Length
4693 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
ATCTCGTCTGCTTCCTGTAGGAC
3' ss Score
9.16
Exon sequences
Seq C1 exon
GTGACTTTGTCTGAACCCAGCGTTTTGTCCAGTACCTCACAGTTTCAGGCCGAGCCAGTAGAAGGCCGTAGAGTCAGCAAAGTTGTTAAAACAACCATGGTACACGGAGAACGGATGGAGAAGAGTCTTGGGGACTCTAGCTTAGCCACTGACCTTCCTTCAGCCAAAGATGACTTTGAAGAG
Seq A exon
GTACAGAAGCCTTGGCTCATTTTTGTGTTTATTTTCCTTTCATGTTTCATGTTTCCTTTGCGTTTGTTTCATGTGCATTTCATGGTTGCTTTGGGTTCAGAAAGAGAATCCTTTGTCACTGCTTCTTTTATGCACAGATTCATGGGAGGTGTTAGGGTACCTCAACAGACCAGCTTTCCTTCTTGAACAATTTGTGTAGTAAAGTAATATTTCCTCAGCCTAGTGGCATTCACTCATGTCACCCCAAAGGGCTCTTAGAAACACAGACTGCTAAGAGTCCTTCCTGTTGATGTGGGGTCAGAGTCTCCAGGATCCAGACAAGAGTCCCTATGTCTGTTAAATTACAATGCCAGCTATGATGGCTAAGGCTTGGAACACTGGCACTGATATGGCTAAGGCAGGGTGCCACGAGTTCAAAGCTAGCATATAGGACAAAATGAGTTCAGGCCACCCTGGACCTCTGAGTGGCATCCTGTCTCAAAAAAAAAAAAATTTTTTTTAAAGTAAATAAATAATAGTGCAGAATGTGTTTCCTGTTAGATGATAGAACTTATTTTTTTATTAGATATTTTGTTTATTTACATTTCAAATGTTATCTCCTTTCCTAGTTTCCCTTCCAAAAATCCCCTGTCCCCTCCCTGCTCCCTCTGCTCCCTAACCCACCCACTCCTGCTTCCTGGACCTGGCTTTCCCCTATACTGGGGCATAGAACCTTCACAGGACCAAGAACCTCTCCTCCCATTGATGACCGACTAGGCGATCCTCTGCTACATATGCAGTTAGAGCCATGAGTCCCACCATGTGTTTTCTCTGATTGGTGGTTTAGTCCCAGGGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGGGTAGAACTGATCTTTGTTAGCTAATATCCTCAGTGGTGGGCATTAATGAAAATTACATTTATTCTAACTTAAAAAGTGTTGGTCATTGTTTACATTCTGATTCTCAACAGCTAGGAAATAACTCTTTAGCGTCAGAAACACAGACTCTCAATATGATTACAAACAGCAAGAATTCTGGGAAAAGAAACAAAACAACAAAATAAAGCCAATGTTCTAAGCTACTGGCAAGGGAATTTGACTCTGTATAAACCAGCTTAGAATTAGAACGCAAAGGGCAGGAGCTGCAACAAAACCCATAGAACATGAAGGCCTCTTATGTAATTTATGAAATATTCATTCTCTGTGACTGAAATGCCTTAGATCTGATTATAGGATATGGCCTGTGATTTCTCTAAGGCATTAATAATATGCAGTGAATATCAGTAGATACTAAATTATCTCAATCCCGAAACACATCTGTTCTAAGGGTTGAAGAAGGGATAACAGACACACATAGACAAATGTAAACCATTCCAAAAAAATTTTTTTTAAATTAAATGCTATACTCTGTTTCCTATACTTATACACTGAGGGATGTTCTGGGTTTTATCCTTTATCATTCAGCATGACCTTTATCATTCAGATCTCCACAATCAGAAGTGGTGTGGTAAAACAAGGAAGTCATTTAAAGTCAGTTGGCCTATATGTTATTTCCAAGCTTTCGGCAAGTAGTGTAAAACTATCTGTGACACCAGTGGAATTTTAAGGGAGATGCTAAAACCTCGATGCCCATACGAACCTGTAGCGGTTGCTCTTGGTTCCATCAGATACTTTTCTGTGTCACCACAGTTAGTCACGCAATAGACTGTTTTAATGTTTGTGGTCTATGAATCAAGTCTTGTTTTCTCTTTTTCTTACCTCAGGCTTTGGGGTACACAGGTAGCCATATGAACGTCCACTTGCCCAGTTTAGTAGAGAATGAAATCCTGAAGGAGGATGGATCAATAATTAAGAGGTTTGGGTTAGCATGGGGTGATGCTTTGCCAACTAACATGATACAACTGGTTTCTAACGTTAGGAAAGGGCAGAGCCCTTCTGGGCTGTTGACTGTCATGTATGAGAAGGCACAGATCAGGCATGGATGTGTCAGTGTGTTGCCCCTGAAATGTCCACTGATGCCTTCAGATTAATACTGAGACATGGCGATGGCAAGCCATTCCTTTATACACTTTGATCTTCTGGGTTCAAGCAGATTGCCCATATAGTCAAGTAGGTGGGGTATACCACCAAGTTCATAGATGTGGAGGTTACATGAAAAGAAGTCTAATCAATGGCACAATGATTGGCTTGGCAGCTAACCACATCCAGCTCAGTCTATCTATTGTGGCTTCAGATAGCATCTGCTTTTCACCGTTAACCAGTTTCATGACCTTGCATGCGAGTGGCAAGAAGTTAGAGCCTAAGTTTGATGCCTTCCATCCTGAATGTACCGAGTGCTGCTGAAAGCAGCTTTGGTAAGAGCCTGTGCAAGTAGTGAGCAGCTTTTTCCCTATGTGTGACAGGGTGCTAGCTGTGAGGCACAGTAAACTGCCTGTGCCATCATAAGTTGGGCTTTACTTCTGTTTGCTCTCACTTTTTTGGTCCTCTGGCACGATTGTAAGCATCAGGACACACATAGACCTCTCAGCTTCTCAGTGAAAGATACAATGGGAACCCAAGTTATAACTGTGCTTCTCATCTCATTGAAAAGAGCAGAAAGATCATCATTTATAGTACCCTACAGGGCTATTTTAGGTTTCTGGATCATAATAATTAGAAGAGAAAAATTAAAGGTTCTGTCATACTCTCACCCTCTGCTCAAAAGGGAGAAACAGCAGCAGCTATGAATTTGGAAGAATGTAATTGCTCTCCTAGAACTTTTAAATGCCATATGAATTAAGGATAAAATGTTTCTGCTGTTCTGAGCATTTAACTCTTTTGTCCAATTGTTCAGATTAAACTATACAGTCCTCACAAACCCTGGTGCTCCAGGATCTGTGAACTAGAATAGATTTGGAAAGCAGTTGACTCACTGTGTCTTTACAGTGCTGGTCAGAAAGCCAAAGATATAGACAGACACCTTGCATTTACCCTGCCAGACAGTGTGGAATTCTATGGTGCATAGTACTTCAGTTATACATTTATCATATGCATGTGTGTATATAAACATCTGCATACATCTGTAGAAAACTAAAAGGAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAAAGAAAGAGAGAGAGAGAGAGAGAGGGAGGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGACTTAGGCTATAGGCCTGCCCTGTGACAAGAGAGCTATGAAATGTCTCCTAACTTCTACAGAAAGAGGCTGATATTTGCCTTTTGTGGAGTAAAAGAAGCAGCACTGCTGGGGACCACCAGAAATAACACAAACTGATTGCATCCACAGCAATCAAGTTTGAATATTCCATCAAGAGGAACAAATGTAGATATGCCATCAAATGAAAAATACAATTCACTTAATATCTACTAGAGTGAAAGGTTTGGGGAAAGGGAGAAGGAAGCAAGGATGTTCAGAGGGAAGCTGTAAGTATTATGGAAGAAGTAAATTTTTAGAATACACGATTGTCCCAGTGAGTGTTTCCAGGTTTGACCATGGTCAGAACTTCAGCTTCTAAACACTGGGAATTCATTAGGAAAATGCTTGTCCTTCTCTGTTGCTGGATTTGAAGGTCCATGACTTCCCAGATATGGACACAGGCTCAGGAATCCCAGTCCCTTATCTAACACTTTTAATAATAATAATAAATAATAATAATAATAATAATAATAATAATAATAATAATGTGGGATGTCGTTAAAATCCTCTAAAGTCAATTTTTCTTATTTGTCATAACTATGATAGGATAGTATGTACGTAAAATATACTCAACACATATTTGCAGTTGAAGCATTATTCTCACAGGTAGAAAGCAAGAAGAATACAGAGAGAACAAATTGTAGTATCATTTTCAAGTGGGGGAATCTAAGAAAATAACTGTATGAAATAAAACAGTAAGCTATAGCATCCTTTCTCAAGAAGCTCCTCGTGAGGCGACAGGGAAGGGAGCGGCCGGCATGCAGGGATGCACAGGCATGCAGGGATGCACTGGCATGCAGGGATGCACAGGACTTAGGCATATGGAGGTCTTGAGGATACACAAGAAGTGTCAGCTCTCACAAGTCATATCTGTTTCCTTTCCCTTTCTTGCTAACTCCCAGGGAAGCTTCAGAGACCTTCCTGTTGGTAGTCCCTGTCTTGTATATTGATAGAATATCCCAGTTTTTAAAGATCTGAATCTCACAGGAAAGTGCTAGTAAGACAAAATTTGGGCAAAGTTGAGGTCTGCGAAGTGAATCGATTTTAAATGATTTTTCTGAGTGTGCCAGTGGTGCCTGTGGGATGGTTATTTCAGAGCAGACAAGGATCTTTCAGATCCGTGCAGCTCAACCGGAACATGAGTCATATGACCTGGCTTCTCTTTGAGAAAATAAAATGGACACACAGAGTCTTTCCCATGAAGTGTTTCTAAAAGATGAAAAAAAAAAAATCAGGTCCTTTCTGACAAGAGAAGCTCACTTGTGAGAAACTCGAGAAACATGCTAATAGAAACACATGCAAAGGTGAAACAGGAAGTTCTTGGGTGTTCAGGGAAGACAGAGCCTAATTAATCTCGTCTGCTTCCTGTAG
Seq C2 exon
GACAACAATGAGTAAAGCCAGGACACAGAGGAGGGCTGTGGTGAAGGACCAGCAGGGGAAACACATCACCTTGGAGCACCTGGAGGATGTTCCCGGAGCACTGGACCAAGACGACCTCCAGCGAGATCTCCAGCAACTCCTTCGGCACTTCTGCAAGGAGAACACAAAGCAAGAGGCCAAATGAGGAGCTGCCCAGTTCTCACCAGAAACCACAAACCCACTCAATATGCAACTTCCCATTTCTGCGCAGGAGTGACTGAAGTGGCCTAATTACTGGGACCCAGTGACACTTCCACTCTCAGCAAACACACAGCATCTACTTTTCCTTCTTTCTCCCTGCCCCTCTCTAACTATAAGCTAATTTGTGACCAAAGATAGCATCCTTCCTTCCGGATGCTGTATCCACTATTTTGAGCATCCGTGCTAACCTGGGAACTGGCATCTCTATTGTTTGCTTCTGCTCAAGCTCCATGAAACTCCATGAATCAGAAGAACTTCACCTGCAGACTTCTTCAAATGACAGGGGAATCCTTCCAAGGGTATCTATGTATAATGTATATAGCCGAAATTCTCAGACGAACAACAGAGTAAAATTCAAACCACTGCCTGTCATAATTACACTGGGCATCATGGAATAAAAGCCTCTAGATATTGCTGAACAATGGTTAATTATGATATTGCTAACACAATCAAATGGTAATACAGTTCTATGGAAGAAACACTTCAGACTTAGACACGTCCTTAGAACTTCCAGAGTAGCCATTTGCTCTTAAAGCCGTCAGGATCATAATCTTGAAGAAGAATCCCTAGGAGTGGTCTCTAGGACTGGTCAGCCATAGCCGTTGGCTCTTGGACTGTGGCCCTGAGGGAGAGGGAGAAGGACTCACAGGCCAGCAGATGGAAACAGCGAGGTATTCTGGTGCTAGAAGCTTCAGGGGTGGTGTTCTAGCACCTTCAGGTGTTTTTGACTTTGGACACGTTGGCAGGGTATTTTAAAAGCTATAACTACTGTAGTTTTCCGGTGTTCATTGCTGCTTTAGCAAACCACGCTGTCTTACTGGTGGTACTTTCTTCTGGCCACTGCACTGTAGATAATTCATTGGAAACAAGATTTATGCACCACACAAAAGGTTAAATGCTGTCACCATGTTGGAGTGGTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTCCCCACCTCCAAGTTTATCTTTCCTCTAATACCTGCATGTAGCATCACACACACACACACACACACACACACACACACACACACACACACATCTTCTCATTACACTAATGGTTTTCACTCTGAGTCTCAACTTTCTCGCCATGTCTGCTCTTCAGCTTGCAGATGAGATTTTGGGAAATCCTTGGAAAATTTGGTTCTCATTAATTTTTTTTTTTGGTTTATTTATTCAAACCCCAGTCACTCTTGGAAACTGAAGTGCATTTGTGTGACTTTCTGTTTGTTTTAGAGAAGGGACAATGACAGTCTGAGTGCTCCCCATGCCCTATGTCGAATCCCCCTAGTGATTGAAGCTGTGTAGCATTTTAACATATATATATAAATATATTCACAAATATATTCATATAAACAGTATACGTTTTGAATCAGTTATTTGTTAAAGAAAGTATATTCAATGAAGATGAAATTAAAAAGAAAAAGAAAGAAAGAGAGAAAGAAAGAAAGAGAGAGAGAGAAAGAAGGAAAACAGCCTACCCTCCAGAGACTGACATTTTTCCAGTCCTATCTAGCCTTTTCCTGTGTGCAGAACTGACTCATTGCTCGGAATGTCAGACACAAACACGACAAACAATAGCACTTCATCTTTTTGAGTAACATTGCCAAGAGAAGAATTTTCCTGGGAGAGAGGTTTCCCATCAGGCAAATCTCCTGAGTCCCCGGCACTAGCACTTTCTGGGGGACTGTGTAGAAACAAAGTGTTCTTTGGCATCCAAACTGAGAGAGAGAGGCAGGTGGCAGCCCTTCTTGAGATATGAGGTGGCCATCTTATCAGATCTTTGCCCTGGAGCTCATGAAAAGCCTTTCTGTTGTGTTATTTGCAGTGCAGATGATGTCCTTGTGGCAACTTAATGGTTCTTCACTTTTTTTTCCTTCAATTTTAATTTTTTTTTTTTTTGCTGTGTTATCAAAAACTTGAATACTGTGAGAAGTGAATTTTCAGTTGATGAATCAGCATCTTGTTCCCATGGTGATAACACTAATTGAATATATCTATGAGGGCATGTATTAGTTATTGGAAAACAATACAACACTAACAATACATAGCTGCAATGTTGTACAATGGCTGATTTAACTAAATAAAATGTATAAGTGTTAAGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-Ank2:NM_178655:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=NA C2=0.792
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: