RnoEX0009355 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231226949-231233089:-
Coord C1 exon
chr2:231232925-231233089
Coord A exon
chr2:231231839-231232021
Coord C2 exon
chr2:231226949-231226963
Length
183 bp
Sequences
Splice sites
3' ss Seq
ACATGTCCTTCAATCATTAGGTG
3' ss Score
7.65
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GTTACCCGGAAAATTATCAGGCGGTACGTATCCTCTGATGGCACAGAGAAGGAGGAGATTACCATGCAGGGAATGCCACAGGAGCCAGTCAACATTGAGGATGGGGACAGCTATTCCAAAGTGATAAAGCGTGTGGTATTGAAGAGTGACACCCAGCTGTCAGAG
Seq A exon
GTGACTTTGTCCGAACCCAGCATTGTGTCTGGTACCTCACAGTTTCAGGCGGAACCAGTAGAAGGCCGTAGAGTCAGCAAAGTTGTTAAAACAACAATGGTTCATGGAGAACGGATGGAGAAGAGCCTGGGGGATTCTAGCTTAGCCACTGACCTTCCTTCAGCCAAAGAGGACTTTGAAGAG
Seq C2 exon
GACAACAATGAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.547 A=0.984 C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000080637fB1062
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]