GgaEX1065937 @ galGal4
Exon Skipping
Gene
ENSGALG00000012044 | chAnk2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NG08]
Coordinates
chr4:56333065-56338738:-
Coord C1 exon
chr4:56338574-56338738
Coord A exon
chr4:56336566-56336748
Coord C2 exon
chr4:56333065-56333997
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCAATTTTCTAACCTTCCAGGTG
3' ss Score
10.24
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTCACTAGAAAGATCATCCGGCGATACGTTTCTCCAGATGGCACTGAAAAAGAAGATATCATTATGCAAGGAACACCACAAAAACCTGTCACAGTTGAAGAAGGAGACGGCTATTCCAAAGTTGTAAAACGAGTCGTGCTGAAGAGTGACAGTGAACAGTCAGAG
Seq A exon
GTGACTTTGTCTGAACCTGGTGTTTTGCCCAGTGCCTCCAATTTCCAGTCTGAGCCAGTGGAAGGCCGCAAGGTCAGCAAAGTCATAAAAACTACTGTAGTGCAAGGAGAGAGAATGGAGAAACACCTGGGGGATGCTAGCTTAGCTACTGATCTTCCGTCGGCCAAAGAGGACTTTGAAGAG
Seq C2 exon
GACAACACTAAGTAAAGCCAGCACACAGAAGAGGACTGTGATGAAGGATCGGTATGGAAAGCATGTTCACATAGAAGAGCTGGATGACACACCAGAAGCGCTACCACAGGATGACCTCCAGCATGACCTTCAGCAGCTTCTTAGACACTTCTGCAAAGAGGACTGGAAACAGGAGGCAAAATAAGAAGCTGTCACCCCTCAACATGTCCATCCAGTATGCAGCGTTCATCTTTTCTAGGTGTAGACATTATGACCTACATAATCACTGGAAGACACTGCCATTTCTACTTGTGCAGATGCAGTGAATTCATTTTTTTTTCCCCCCTGTATTTGATTTCAGGTTTTTGTTATTTTTTACCCTGTAAGCTAATTTGTGACCAAAGATAGCATCCTTCATTCGGGATGATTTATCCACCAATTGTCGTCTTTGTGCTGTACTGGGACCTTGTCAGCATCGCCACTTTTTGCCGGTCCTTTGCTTCTGCACTAGCTTCCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'90-92,'90-86,93-92
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.834 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSGALT00000019661fB2134
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTCGTGCTGAAGAGTGAC
R:
TGGATGGACATGTTGAGGGGT
Band lengths:
250-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]