DreEX6007842 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57589510-57596311:-
Coord C1 exon
chr7:57596147-57596311
Coord A exon
chr7:57589776-57589964
Coord C2 exon
chr7:57589510-57589601
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATCATGTCTTTGCATTTCAGGTG
3' ss Score
10.25
5' ss Seq
AAGGTCTAC
5' ss Score
0.68
Exon sequences
Seq C1 exon
ATAACAAGGAAAGTTATCCGCAAGTATGTGTCAGCAGATGGCGTAGAGAGAGAGGAAGTGATGTTGGAGGGCCCGCAGCAGGAAGCTGTCACTGTGGACGAAGCTGACAGTTTCTCTAAAGTGGTGAAGAGGACAGTGGTGCGGAGCGGAGGAGATCAGACTGAG
Seq A exon
GTGACCTTCTCTGAACCTCTCTCTTATGCTGGGGCGACATCATCTAAATTTGAAGAAGAGCCTGTTCAAGGTCGGAAGGTCAGCAAGGTTGTCAAAACCATGGTAGTGCAAGGTGATCGAATGGAAAAACTCATCGGAGACCCTTCTCTCTCATCTGATCTCCCATCAGCCAAAGACGACTTTGAAAAG
Seq C2 exon
GCTTTGAGTTATGTAGAAGGCTTTGAGAAAGTGCTTCTGCCTCATTTAGTTGAGAAAGAGACGGTGAAAGAGGATGGATCAGTGGTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-'78-76,'78-75,80-76=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.524 C2=0.387
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000147287fB1171
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGCAAGTATGTGTCAGCA
R:
CTTCTGACCACTGATCCATCCT
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]