GgaEX1065937 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58289055-58293913:-
Coord C1 exon
chr4:58293749-58293913
Coord A exon
chr4:58291741-58291923
Coord C2 exon
chr4:58289055-58289172
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCAATTTTCTAACCTTCCAGGTG
3' ss Score
10.24
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTCACTAGAAAGATCATCCGGCGATACGTTTCTCCAGATGGCACTGAAAAAGAAGATATCATTATGCAAGGAACACCACAAAAACCTGTCACAGTTGAAGAAGGAGACGGCTATTCCAAAGTTGTAAAACGAGTCGTGCTGAAGAGTGACAGTGAACAGTCAGAG
Seq A exon
GTGACTTTGTCTGAACCTGGTGTTTTGCCCAGTGCCTCCAATTTCCAGTCTGAGCCAGTGGAAGGCCGCAAGGTCAGCAAAGTCATAAAAACTACTGTAGTGCAAGGAGAGAGAATGGAGAAACACCTGGGGGATGCTAGCTTAGCTACTGATCTTCCGTCGGCCAAAGAGGACTTTGAAGAG
Seq C2 exon
GACAACACTAAGTAAAGCCAGCACACAGAAGAGGACTGTGATGAAGGATCGGTATGGAAAGCATGTTCACATAGAAGAGCTGGATGACACACCAGAAGCGCTACCACAGGATGACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'72-79,'72-75,75-79=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGGCGATACGTTTCTCC
R:
TCTGGTGTGTCATCCAGCTCT
Band lengths:
247-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]