BtaEX0003411 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13381111-13390442:-
Coord C1 exon
chr6:13390359-13390442
Coord A exon
chr6:13390083-13390247
Coord C2 exon
chr6:13381111-13383858
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATGAGTAAAATATCTTCTAGGTT
3' ss Score
5.42
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGAGATGATATGCCTGACATACCCCCAGAAACAGTCACAGAAGAAGAATACATCGATGAGCATGGACACACCGTGGTAAAGAAG
Seq A exon
GTTACTAGGAAAATCATTAGGCGGTTCATCTCCTCTGACGGCACAGAGAAAGAGGAGATTACGATGCAGGGAGCACCACAGGATTCTATCAGCGTTGATGAAGGGGATGGTTATTCCAAAGTCATAAAGCGCATTGTATTGAAGAGTGACACCGAGCAGTCAGAG
Seq C2 exon
GACGACAATGAGTAAAGCTAGAACCCAGAAGAGGGCTGTGGTGAAGGACCAGCAGGGAAAACGCATTTACTTGGAGCACCTGGAGGATGTCCCAGAAGCGCTAGACCAGGACGACCTCCAGCACGACCTCCAGCAACTCCTTCGGCATTTCTGCAAGGAGGACTCGAAGCAAGAGGCCCAGTGAGGGGCTGCCCAATTCTCACACCAGAAACCACACCTTCACTCAATATGCAACGTCCCGTTTCATTAGAGGAGTGACCTCACTGGCCTGATTAATGGGATACCCTGACATTTCACTTTCAGCAAACATGCGGCATTTGGTTTGAGTTTTCCCCCATCCTCTTTAACTGTAAGCTAATTTGTGACCAAAGATAGCATCCCTCACTCTGGATGCTGTATCCACTGCTCTGTTGTGTCTGTGCTGACCTGGGACCTGGCCACCTCCGTTGTTCTTCTTGGCTTCTGCACAAGCTCCATGAAAATCCATTCAACGGGAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392_MULTIEX1-2/4=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTGACATACCCCCAGAA
R:
CCTCTTGCTTCGAGTCCTCCT
Band lengths:
251-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development