RnoEX6011485 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231231827-231233286:-
Coord C1 exon
chr2:231233203-231233286
Coord A exon
chr2:231232925-231233089
Coord C2 exon
chr2:231231827-231232021
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACTCATGAAATGTCTTTCAGGTT
3' ss Score
8.36
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGAGACGATATGCCTGACATTCCCCCAGAGACAGTCACAGAGGAAGAATACGTCGACGAGAACGGGCACACTGTGGTGAAGAAG
Seq A exon
GTTACCCGGAAAATTATCAGGCGGTACGTATCCTCTGATGGCACAGAGAAGGAGGAGATTACCATGCAGGGAATGCCACAGGAGCCAGTCAACATTGAGGATGGGGACAGCTATTCCAAAGTGATAAAGCGTGTGGTATTGAAGAGTGACACCCAGCTGTCAGAG
Seq C2 exon
GTGACTTTGTCCGAACCCAGCATTGTGTCTGGTACCTCACAGTTTCAGGCGGAACCAGTAGAAGGCCGTAGAGTCAGCAAAGTTGTTAAAACAACAATGGTTCATGGAGAACGGATGGAGAAGAGCCTGGGGGATTCTAGCTTAGCCACTGACCTTCCTTCAGCCAAAGAGGACTTTGAAGAGGTACAGAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-'100-93,'100-91,101-93=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.835 A=0.547 C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCCTGACATTCCCCCAGA
R:
TTGGCTGAAGGAAGGTCAGTG
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]