DreEX6030692 @ danRer10
Exon Skipping
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13463747-13466049:+
Coord C1 exon
chr1:13463747-13463830
Coord A exon
chr1:13465191-13465355
Coord C2 exon
chr1:13465876-13466049
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTACCTGCTCAGGTG
3' ss Score
9.82
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GGTGATGATGTTCCAGATATTTCTCCACAGTCAGTAACAGAAGAGCAATACACAGATGCTCAAGGCAACTTGGTTGTAAAGAAG
Seq A exon
GTGACCAGGAAGGTGATTAGACGATGTGTGTCCTCTGATGGGGTGGAGACAGAGCAGTTGAGGGTGGAGGGCTCTGCTCAGCAGCCTGTCCATGTGGCTCCAGGGGACAGTTACTCCAAAGTAATGAAGAGGACAGTACTGAAGAGCGAAGGACATGAAACAGAG
Seq C2 exon
GTGACTTTCCATGAGAAAGACAGCATTTCGGCTTCAAGGGGGGAGTCTGCCGCTGGTCAAGAAGTCAGACAGATGGTCCAGACAACAGTGGTACATGGAGAACAGTTGGAAAAGCATGAGGGGAATCCATTCCTTGCCAGAGACTTGCCCTCTGCTCGGGATGACTTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026-'61-60,'61-59,62-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=0.600 C2=0.879
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATATTTCTCCACAGTCAGT
R:
GTGAAGTCATCCCGAGCAGAG
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]