GgaEX6035128 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58291741-58295608:-
Coord C1 exon
chr4:58295525-58295608
Coord A exon
chr4:58293749-58293913
Coord C2 exon
chr4:58291741-58291923
Length
165 bp
Sequences
Splice sites
3' ss Seq
GCTCTATTTCATTCCTTCAGGTC
3' ss Score
10.71
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCCGATAGTATGCCTGAAATGCCACCAGAAACAGTCACAGAAGAACAATACACAGATGAACATGGCCACACAGTGGTGAAGAAG
Seq A exon
GTCACTAGAAAGATCATCCGGCGATACGTTTCTCCAGATGGCACTGAAAAAGAAGATATCATTATGCAAGGAACACCACAAAAACCTGTCACAGTTGAAGAAGGAGACGGCTATTCCAAAGTTGTAAAACGAGTCGTGCTGAAGAGTGACAGTGAACAGTCAGAG
Seq C2 exon
GTGACTTTGTCTGAACCTGGTGTTTTGCCCAGTGCCTCCAATTTCCAGTCTGAGCCAGTGGAAGGCCGCAAGGTCAGCAAAGTCATAAAAACTACTGTAGTGCAAGGAGAGAGAATGGAGAAACACCTGGGGGATGCTAGCTTAGCTACTGATCTTCCGTCGGCCAAAGAGGACTTTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'70-75,'70-73,72-75=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=0.926 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGAAATGCCACCAGAAA
R:
CTCTTTGGCCGACGGAAGATC
Band lengths:
245-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]