DreALTD0000861-3/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000100088 | CU915738.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9GXL1]
Coordinates
chr15:37122103-37128313:-
Coord C1 exon
chr15:37128276-37128313
Coord A exon
chr15:37128177-37128275
Coord C2 exon
chr15:37122103-37125368
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CCCTCTTTTGGCTTCCGCAGGGA
3' ss Score
11.5
Exon sequences
Seq C1 exon
GAAGCGCGGCTCAAATCCTTCAGAAAGCAGAAGTAAAG
Seq A exon
GTGATTAATGATACAGTGTGCAACATGGTGACCGAAGGTCAGGTGACCTCTAGAATGATGTGCAGCGGCTACCTTTCTGGAGGTGTGGATGCTTGTCAG
Seq C2 exon
GGAGATTCGGGTGGCCCTCTTGTGTGTCTTTCCGAAGGTGGCAAATGGTTCCAGGCTGGCATAGTGAGCTGGGGAGAAGGCTGCGCTCGGAGGAACAAGCCTGGCGTTTACACGCGTGTCACCAAACTGCGGGAATGGATCCGTGAAATCACATCCTTATAGTGGAGCCTGGACCTGCAATCACAGCGACAACCAAAGCAGAAAAACCGAAATGTTCAGTGGCAGCACATTTTAGGAAAGTTTGTGAACTGCACGCACACAAAGTTAAAGCAACACTCCAAATAGTTTTGCAAATAGGCTTCTTTTACAAGTAAGCTAAAGTTAAACCGTATCTAATTTTTATTCCATTCAGCCAATCTCTGGGTCTGGGGAAGAACTTTTAGCTTAGCTTACCTTAGCATAGCCATTGGGTTTTCTGATGAGTGTGTTGTTAGGTAAAGGAGTAAACTTTTTAGCGAATGTTTATTGCTGTCATTTGTGTTTATTTTAATTGTAATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100088-22-21,23-21,24-21-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGGCTCAAATCCTTCAGAA
R:
GATCCATTCCCGCAGTTTGGT
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]