DreALTD0001089-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1575719-1579483:+
Coord C1 exon
chr13:1575719-1575784
Coord A exon
chr13:1575785-1575826
Coord C2 exon
chr13:1579293-1579483
Length
42 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
GTACTGTATTCCTCCTTCAGCTA
3' ss Score
7.79
Exon sequences
Seq C1 exon
TTCACCACCACGGGAGTAAAATGTTGCGCTCGGAATCAAACTCTTCAATTACTCAGTCTCCTATAG
Seq A exon
GTTGGCAACTCTCACACTTTCTGTCCTTGCTCCATCCCAGTG
Seq C2 exon
CTAAAGGCAGGACAAACGTGGAGCTGCGGGAGAAGTTCATTCTCCCAGAAGGCACCACGCAGGTGATGGCAAGCTTCCGGTACAGAGGTCGAAGGTCACGGCCGTCCTCACGAGGAGCCTCCCCTAACAGATCCAACTCCAGTCATAGCTGCGCTGCACAGAACAACCCGCTCGCACCAAACACACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858-65-68,66-68-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=NA C2=0.781
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(3.8=8.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCGCTCGGAATCAAACT
R:
TGACCTTCGACCTCTGTACCG
Band lengths:
143-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]