DreEX0004502 @ danRer10
Exon Skipping
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1573875-1579483:+
Coord C1 exon
chr13:1573875-1573992
Coord A exon
chr13:1575719-1575784
Coord C2 exon
chr13:1579293-1579483
Length
66 bp
Sequences
Splice sites
3' ss Seq
CCAGTTATTGTTTCTTCTAGTTC
3' ss Score
7.15
5' ss Seq
TAGGTTGGC
5' ss Score
2.04
Exon sequences
Seq C1 exon
TTCGGAGATTCCCAGCAGCTACGTCTGGTGCGGATCCTGCGCAGTACAGTGATGGTGCGGGTGGGTGGAGGCTGGATGGCCCTGGACGAGTTCCTGGTGAAAAATGACCCGTGCAGAG
Seq A exon
TTCACCACCACGGGAGTAAAATGTTGCGCTCGGAATCAAACTCTTCAATTACTCAGTCTCCTATAG
Seq C2 exon
CTAAAGGCAGGACAAACGTGGAGCTGCGGGAGAAGTTCATTCTCCCAGAAGGCACCACGCAGGTGATGGCAAGCTTCCGGTACAGAGGTCGAAGGTCACGGCCGTCCTCACGAGGAGCCTCCCCTAACAGATCCAACTCCAGTCATAGCTGCGCTGCACAGAACAACCCGCTCGCACCAAACACACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.891 C2=0.781
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(75.0=100)
A:
PF0218712=GAS2=PD(3.8=8.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGAGATTCCCAGCAGCTA
R:
GTGGTGCCTTCTGGGAGAATG
Band lengths:
176-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]