BtaEX0012096 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3679404-3681882:+
Coord C1 exon
chr23:3679404-3679521
Coord A exon
chr23:3680672-3680743
Coord C2 exon
chr23:3681683-3681882
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGTCATTTCTTCTAGTTC
3' ss Score
9.23
5' ss Seq
TAGGTTGGC
5' ss Score
2.04
Exon sequences
Seq C1 exon
TTTGGAGACTCCCAGCAACTTCGGCTCGTCCGCATCCTGCGCAGCACCGTGATGGTTCGCGTTGGAGGTGGATGGATGGCGCTCGATGAGTTCCTAGTGAAAAACGACCCTTGCAGGG
Seq A exon
TTCATCATCATGGGAGTAAAATGTTACGCTCGGAATCAAACTCTTCAATCACTACTACTCAGCCTACTATAG
Seq C2 exon
CTAAAGGAAGGACGAACATGGAACTGCGGGAGAAGTTCATCTTGGCGGATGGAGCCACTCAGGGCATGGCTGCCTTCCGGCCGCGGGGCCGGAGATCCAGGCCCTCATCCCGGGCGGCCTCGCCCAGTCGGTCCACGTCCGTGTCCGGTCAGGCCGGCCAGGCCGCCTCCCCGCAGGTCCCTGCCAGCAGCACGCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.920 C2=0.750
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(49.4=100)
A:
PF0218712=GAS2=PD(2.5=8.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACTCCCAGCAACTTCG
R:
GCTCCATCCGCCAAGATGAAC
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development