MmuEX0015773 @ mm10
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34299721-34303032:+
Coord C1 exon
chr1:34299721-34299838
Coord A exon
chr1:34301861-34301932
Coord C2 exon
chr1:34302830-34303032
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGTCGTTTCTTCTAGTTC
3' ss Score
9.97
5' ss Seq
TAGGTCGGC
5' ss Score
2.81
Exon sequences
Seq C1 exon
TTTGGAGACTCCCAGCAGCTGCGACTGGTTCGGATCCTGCGAAGCACAGTGATGGTTCGTGTTGGAGGCGGATGGATGGCTCTGGATGAGTTCTTAGTGAAAAATGATCCCTGCAGGG
Seq A exon
TTCACCATCACGGGAGTAAAATGTTGCGTTCGGAATCAAACTCTTCAATTACTGCTACTCAGCCTACTCTAG
Seq C2 exon
CTAAAGGAAGGACCAACATGGAGCTGCGGGAAAAGTTCATCCTAGCAGACGGTGCCAGCCAGGGTATGGCCGCCTTCCGACCGCGAGGCCGCCGATCTCGCCCTTCATCCAGAGGAGCTTCCCCCAACAGATCCACTTCCGCGTCGAGTCATGCCTGCCAGGCAGCCTCCCCACCGGTGCCTGCTGCCGCCAGCACACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.920 C2=0.693
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(49.4=100)
A:
PF0218712=GAS2=PD(2.5=8.0)
C2:
PF0218712=GAS2=PD(2.5=2.9)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATGGATGGCTCTGGATGA
R:
GGGGAAGCTCCTCTGGATGAA
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types