MmuINT0053640 @ mm10
Intron Retention
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34301861-34303032:+
Coord C1 exon
chr1:34301861-34301932
Coord A exon
chr1:34301933-34302829
Coord C2 exon
chr1:34302830-34303032
Length
897 bp
Sequences
Splice sites
5' ss Seq
TAGGTCGGC
5' ss Score
2.81
3' ss Seq
GCCGCCTGCGTGCAATCCAGCTA
3' ss Score
4.3
Exon sequences
Seq C1 exon
TTCACCATCACGGGAGTAAAATGTTGCGTTCGGAATCAAACTCTTCAATTACTGCTACTCAGCCTACTCTAG
Seq A exon
GTCGGCACCCCCCCCTTGGCTCCTCCCTCTCCCTTTTCTCTCTTTCACCTTCACATTCCCGCTTTCATGATTTGTTTTAATATTAATACGCTTCATTCACGCGTATGGCTTAACTCACATGCAGCGAGCTGGGGCTTCTAGTCATAAACTCTGAAAACGCAACACGCTCAGTGTTACACAGCGATCAAGCACATGCTAACACGTTGCCCATCGGGTCCTCGTGGAGCGTTCTCCATGTGCATATGTGTTTGTGTGAGTGCTACATCACCGGTGGCCTCTAGTGGATTCCTGGGTCTGGTGTCTGTTACTGCATGTTGGTAAAACCGTTTGGTTTTGGTTTGGGTTTTTGTTTTTTTTTTAAGGGCCAAAAAATTAAAATGCTAGTTGCCTCACTTGAGTGAAAATTCTGAAAGCTTTTATGTTATCTACATGACTAACAAGCCATCTCTGATTTTATATAATTGTTTAATCCCGATCCTAAATACTGGCATTCTCCGGACCTCGGCAATACATGTAAAAGACACGGCCCCGCCTTCCTCAGTGTGGTGTAAGGGTGACAACGTGTGGGCATCCGTAGCTGGTGGACTAACGGTAGCATGAGCTTTCCATTTTCATGCTGACTTTGTTTTACACTGGCTATTCCTGCTGCCGTCTAGTGTTAGAGTGAGCCCGCCCCTCCCCATCTCCATGGTCCCTCGTTTCTGAGAGGAATGCATTGTGAAGGAATGCATTTTTAACTTCTTGTTATGCTGAGTTGGAGCTGGCATGGCAAAAAGATGTTCTCGAGGTCCTCCGCGTGCTGTGTGGTGCCAGGTGTGCCCTCCCTCCCACAGAGACTGAAGGCTTTCTCTTCCTGTCTGTTCATTGTTCTTCTTTTGCCGCCTGCGTGCAATCCAG
Seq C2 exon
CTAAAGGAAGGACCAACATGGAGCTGCGGGAAAAGTTCATCCTAGCAGACGGTGCCAGCCAGGGTATGGCCGCCTTCCGACCGCGAGGCCGCCGATCTCGCCCTTCATCCAGAGGAGCTTCCCCCAACAGATCCACTTCCGCGTCGAGTCATGCCTGCCAGGCAGCCTCCCCACCGGTGCCTGCTGCCGCCAGCACACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131:ENSMUST00000097785:95
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=NA C2=0.693
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(2.5=8.0)
A:
NA
C2:
PF0218712=GAS2=PD(2.5=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCATCACGGGAGTAAAATGT
R:
CTGGCAGGCATGACTCGAC
Band lengths:
232-1129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types