RnoINT0051572 @ rn6
Intron Retention
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:37907635-37911079:-
Coord C1 exon
chr9:37910962-37911079
Coord A exon
chr9:37907838-37910961
Coord C2 exon
chr9:37907635-37907837
Length
3124 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
GCCACCCGTGTGCAATCCAGCCA
3' ss Score
2.98
Exon sequences
Seq C1 exon
TTTGGAGACTCCCAGCAGCTGCGACTGGTTCGGATCCTGCGAAGCACCGTGATGGTCCGTGTTGGAGGTGGATGGATGGCTCTGGATGAGTTCTTAGTGAAAAACGATCCGTGCAGGG
Seq A exon
GTAAGGAGACCCTTTGGTCGCGGTGTCAGCACCCTGAAAGCACAGCCAGGTGGGGTGTTCCCACACTGAAAGCAAACCGAGCCCAGCCTGAGGCCCACAGCCAATGGCTCCCAGTGGCCTGTAAAACATGTTCTCTCTCTCTCCTATTTCCCCACTAATGGAATAAATTTCGGACAGGTAGGTAGGAAATACTGTCTGGGTTTTCTGTGTAAGACCTTCCTGACTGCAGTTTCCAGAATGGGCATTTCCATTCACCAAGACAGAATACTAGAGAGTAAACGTTTAAAAGTCAAGTTTTTCTGAAGTGAGGGGAAAAGGGGGGCGAGAGCAAACACTCTGAGGTTGAATAGCAGAATATTGAACATGTAAATATTATATTGTGGCTTATCTACCAGCCTAGGAGTTTTAGCTTCTAGTATTCCTATTTTGTCTCTTTAAGATTATAGTATTACTTATAATTATATTTATGTCTGTGGTATGTGTATGTGTGTGCCAGTGTCCACAGAGACCAGAGGTATCAGATCCTCCAGAACTGGAGTTACAGGTGGTGGCGAGCCACTCACGGGCACCTCGAGACCAAACTCAAGCCCTCTGAGGCCAGAATAATGAGTGCCCTTAACCACGGAGCCATCCCACCAGCCCAAACAGTCCTGTTTCTAATGTCCTGCAGCTATTCGATTCTAAATTGGTCGTATGCATATCTGACTAGTTTCCAATTAGTTACCACCTATTCAGTAAGCATACGTTGTTTTCTGACTTTACGAAAAGCAAACGGTAGGATTGCCATGACTTAGTCTGTGAGCCTCCTATAGTCCTTTAAAAATGTCTCTTCCGGCTTTGCGGGTTAGGCCACCAAGTGAGAAGCCAAGCAGGAAGTCTCCTGTCAGTGCTGGCATCTGGATACAGCTGTGTCAGCAGGCAGGCCTGCCTTATCAAGGCCAGCACACACTGCTGCACGGCCACACGGTAGCTGCTCTTTGTTAGGTAAAGATGCAGCATAAGGAGAGGCACAACAAGGCGTAACACTCCTGATTCATCAGCCAGCGGGCTTACTAAACACAGGGTGTGTCTGAGCAGCATGCTGTCGGGCATTTTCACCATGGCACAGACACGACATATACATAATACAGACCTAAACGGTTTAACATCCTACATACCAGGGGTCTATAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTGTGTGACTGTGTGTGTCTTTATCTATCTGTGTATGCATGTGTGTGTATGTATCTCTGTGTGTATGTGTGTGTGCATGTATGTGTGGGTCTATGTATGTATGTGTGTGTGCATGTGTGTATATGTGTGTCTGGATGTATTTGTGTGTGTGTGCATTTGTGTGTATGTGTATTTGTGTGTGTGTATGTTGTGCATGTATGTATATATGGGTGTGTGTAAGTGTGTATGGGTATGTGGGTGTGTGTGAGGGCGTGGTACATTACCTGATGCTCGAAAAGCCATGATGAATAAAAACAATGTGTGACTGAATTGAGTACAAGATAAAACTATGCAACCAGAAAGTGCAGTCACCATCAGATGCATAAGGTTGCTGCTGATCTGACAGGAGAAAACTGATGTGCTCTAATAATACATATAATATGGTAAAAAACCTAAAACAGCAACATAGTCTCTATTAGCACAGCCACAGCATCTTGTCCTATCTGTAACTGTGTTACACTTTTCTGCAAATGGTAGTGCAGGAGGCTTGCTTACAACAAACATGTCAGTAGAGTTGTTGTACTGTGCCCTTGAGACAGGTGATAGAAATTTCTCAGCTCCATTAAAGCCCGTTGTGTCATTTGGGGTACAAGGACTACACTCTACAAAGAACACAGCCTGAGGTAAAGGCAGCTCTGAGTAGGAAACAGCCTTGGAGAGACAAACCACCTGAGGGATCAGAGGACAAGCTAGCATGGCCGGCTGAGCTTTCGCAGCTGCTTTCTCCCGGTTGAGTCCGACCTTGCAGCAGGGCTTCTTCTCCTGATGTGCCTTCTCTCCTAACTGTGTGTTAAAGGCTGGATCTGAGCTCCCTCTGCACACCCAATCACTGTACTTTGTTTCCTCTGCTAACAGCGTTCTTTAATGTGACCGGTATCCTGTGTCGTTTCTTCTAGTTCATCATCACGGGAGTAAAATGTTGCGTTCGGAATCAAACTCTTCAATTACTGCTACTCAGCCTACTCTAGGTCGGCACCTTCCCCACCCCTTGGCTCTCCCCTTTCTCTCTCCTACCTTCGCATTCCTGCTTTCATGATTTGTTTTAACATAATATGCTTCATTCGCGCGTATGGCTTAACTCACATGCAGCGAGCTGGGGCTTCTAGTCATAACTCTGAAAACGAGACACGCTGAGTGTTACACAAGGGATCAAGCACATGCTAACACGTTGCCCATCGGGTCCCTGTGGAGTGTTCTCCATGCGCACATGTGTTCGTATGAGTGCTGCATCACCAATAGCCTCTAGTGGACCCCTGGGTCTGGCGTTTGTTACTGCATGTTGGTAAACCCGTTTGTTTGTGTTCTTGGTTTTGTTTTGGTTTTTTTTTTAAGGCCTAAAATTAAAATGCAAGCTGCCTCACTTGAGTGAAAATTCTGAACGTTTTTGTGTTATCTTCATGACTAACAAGCCATCTCTGATTTTACATAATCGTTTAATCCCAATGTTAAATACCGGCATTCTCCAGACCTCAGCAACACATGTAAAAGACACGGCCCTGCCTTCCTGACGTGTCTGCTCAGTGTGGTATGAGGGTAACAACAACGTGTGGGCATCCGTAGCTGGTGGACTGACAGTAGTAGCATGAGCCTCCCATTTTCACGCTGACTTTGTTTTACACCGGTTCCTCTTGCTGGCGTCTAGTGTTAGAGTAAAAGCCCACCCTCTCCCATCTCCACGGCCCCTCGTTTCCGAGAGGAATGCATTGCGAAGGAATGCATTTGACTTCTTGTTATGCTGAGTTGGAGCTGGCATGGCAAAAAGGTGTTCTCGAGATTCTCCGAGCGCTGCGTGGAGCCAGGTGGCCCTCCCTCCCGCAGAGACTGAGTGCTTTCTCTTCTTGTCTCTGCATTGTGCCACCCGTGTGCAATCCAG
Seq C2 exon
CCAAAGGAAGGACCAACATGGAGCTGCGGGAGAAGTTCATCTTAGCGGACGGGGCCAGCCAGGGTATGGCTGCCTTCCGACCACGAGGCCGCCGATCTCGGCCTTCGTCGAGAGGAGCTTCCCCCAACAGATCCACTTCCGCATCCAGTCACGCCTGCCAGGCAGCCTCCCCACAGGTGCCTGCTGCCGCCAGCACACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207:ENSRNOT00000044452:96
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.676
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(49.4=100)
A:
NA
C2:
PF0218712=GAS2=PD(2.5=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]