GgaINT0079361 @ galGal3
Intron Retention
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89928018-89930323:+
Coord C1 exon
chr3:89928018-89928135
Coord A exon
chr3:89928136-89930254
Coord C2 exon
chr3:89930255-89930323
Length
2119 bp
Sequences
Splice sites
5' ss Seq
GGGGTACGT
5' ss Score
7.73
3' ss Seq
TCCTGTGTCATTTTTTCTAGTTC
3' ss Score
9
Exon sequences
Seq C1 exon
TTTGGTGACTCTCAACAACTACGCCTTGTTCGTATCCTAAGAAGTACGGTCATGGTTCGTGTTGGAGGTGGCTGGATGGCACTTGATGAGTTCTTAGTGAAAAATGATCCTTGCAGGG
Seq A exon
GTACGTAACAGGATTGCTAAAATGGACGTGAAGATAATGGTTTGGTTACAGGCATCATTCATTGTCTTGAGATAGAAATGTATAAAATGCCAGTTCTGTAAACAGCATCTCACTTAATGTCTCATAATGATCTGTTTTTGTAAACTTTAAATCCCACAGTTAAGATCCTCTACACTTACACTCATGTATGTACAGAATAACTGTGGTGTCTTCTGCGCAGTTTGTCCACTGTTAGAATGGTGTAATTAAGAATTGAACCTAGCCCAGCTGGAGTTTACAGCCTGTAAGCTGCTTGTATGACTTGGCAGAAATAGCACAAGATATGTCCAATTAAACCTTCTCAGCAGGAGAGAAATGTTAAGGCCATAAATCAAAAGAAGGCAATTGAATCAAAAAGAATAACAACAATAGAAAAACTTCCCTCTGCAGTGGCTGCACCCACGCTTTCAGTCTCTGCCTTTGTAGCCCTGTCTTCTCATTGGCATGCTCCCCAGCACCACTTTGCAGAGCTCTGGGCCTTGTACAAAGCAAGTAGAAGTTGCTGTGATCAGGAGAACAGTGTTCTGAGGAAGCAGGGAGTGCTCTATCACCATACACTCCAGGGCATTGTATCAAATGGATTGTTTTATCAGTACTGGGAGACTTAGTGACATCTTAGTTTGCCTGCTTCTGTAGTGGGAAGGTAGGTAGGCTCTGTCTGGCACCATTCCTGAGGGAATATTAGGAGACAGGAAGAAAGTCGTTTGAGACTGTAGTTAGTGGAAGAGATGAAAGTCAAAGAATAGTTAGAATAGTAACATTCCAAAGAATATTGTGTTGACTGTGTTCAGACTTAACTAATGTTGCATAACTAGGTCATTCTATCCACTTAAGTAACAGAATTAAATTTACTCCAATTTACCTCTCAAGAGTTCTGTGGAATTACAGTCAATGCTGTAACAGCATGAGTTCAAGGGAGAAACACAGTATTGAAGAAGAGGATATTAGCTGTCCTGTAGACTTTGCTCAAGTGGCAACTGTCTGATGCAACTTCTGCTTTGGCACCAGGGTTTCTAAGCAGATCAGCATAGACCCTGAGAGCCTGAACAACTTGTTTTTGTACAACTTGCCATGTTAAGACAGGGATGCTAAAACAGAAAAGAGGCTACCACAGAATCCTATAAGGGCTGACAGGGTATACCACTCTGCCCTGGAAAGTTCTGTCCACAGGCTTGAAAGGTATCCATGAAACTTTAAAAGACCTACTGTAACCCTCTAATGATATATGTGAGGTTTTCAGCAGTATTAAAAATCGGTCTTTTCCTTAGCATCATACTACATACCAAACATTTGTCTCACGCCTGTTGATGGGCAGACTGTTGTAATTCCTAGTTGAGTTGATGCTGAAAGCTACAATAATGAATATCTGGTTAATACATATGATTTCCTTATTACTCTGTCTTCAGATAGAGAGACATTTAGAACTGTAGTCACCGTCCCTTCCTTCCCTTCTTCTTTAACAAACCTTGTAATTTACATACCTCTATAGTATTTGCTGTTATGCTTTGTCCCTTTTTCATGGGATGTACATGCACAGATGTGTAACTCAACACAGTGAGAAAGGAATACTAATCTCTGTAAAATCATCCAGATTCTGAAAGGTGTCCATTGGTATGTAATCCTGACTGGACTTAAGTCAATGATGTAAAGTAGACAGTGATCTTAGTGGTGCAGGTTCAGGCTTTTCCTTGAGCGCTTGGCCTAGCAAATCTGCATGTCTACCAAGAGCTTCTCATGCATGTAAATAAACAACATTTCAGAGAACTGTTGTCATAAATAGATTAAAATATATTTGGCCTAGTGACATAAAAGTTTTAGCTTATATTACTTCTTTATGTCAGCAGATAAATACCTTTACTACACATGTATTACTTAGGACTGCAGTTGAGTCTACCCAAGCACTTCTTTCTTTTGCTTAGGGGAACACTGAGAGTTCACCTCAGAGCACTTAAAGACAGCTTTTGCTCTGAGTCCTGTCTTTTCGCTCCGAGTCCCTTGCATATGCAGCTGCTATACTTGATTTCTTCTCCTGTTAACAATTTTCTTTAATGTGACCCATGTCCTGTGTCATTTTTTCTAG
Seq C2 exon
TTCATCATCACGGGAGTAAAATGTTACGTTCGGAATCAAACTCTTCAATTACCACTCAGCCTACTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289:ENSGALT00000026264:98
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.917
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(49.4=100)
A:
NA
C2:
PF0218712=GAS2=PD(2.5=8.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]