DreINT0011436 @ danRer10
Intron Retention
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1575719-1579483:+
Coord C1 exon
chr13:1575719-1575784
Coord A exon
chr13:1575785-1579292
Coord C2 exon
chr13:1579293-1579483
Length
3508 bp
Sequences
Splice sites
5' ss Seq
TAGGTTGGC
5' ss Score
2.04
3' ss Seq
GTACTGTATTCCTCCTTCAGCTA
3' ss Score
7.79
Exon sequences
Seq C1 exon
TTCACCACCACGGGAGTAAAATGTTGCGCTCGGAATCAAACTCTTCAATTACTCAGTCTCCTATAG
Seq A exon
GTTGGCAACTCTCACACTTTCTGTCCTTGCTCCATCCCAGTGGTATGTGTGCATCCCTGTGCGAGCGTGTGTGTGTGTGTGTGTGTGAGCTGCAGTGATCTTTGAATGGTATTCTCATTAACATTAATCTCACGCTTCCCTTTCCATCTTTCTGTCTGGGACTGTTTAGCATGAGGTTTTGTGTTGCGTCATGTGTCCTCTATCTCCCTCTGCATGTGCTTTCTGTTGCAGTGCAGTGAAACGTGCTGGACAATCATATTGAAGTCATCTACACACGATACTCTGACTACATTTGTGCTGTTTTTATAACTGCATTATTTGGAAGTTAGTCCTCTATAATAAAGCCTCATTCACACTACGAGCGACACACACATCGGGAATGCCCATTCATTTCAATGAGGAGTGGGTGACTCCCGACAACCTCCGCACTGCAAATAACGCTTTTCTTGCTTACATTTTTTGTCTTGTTTTTAGTCCAAATATCTACAAATTCTTAAAGCAAGCAGCATTTTCTTGACCAGCAAAACATATTTTCTAATTTTAAGAAATAATGTGCCAAATTTAAGTGAGTTTTTCTGTAAAACAAGCAAAAATTACGCAGGTTAAAAAAAAGTGTTGAACACATGAAGAAAGGGAGGTGTAGAACGACATGGAAAGCCCAGACAGCAGCTGAAATCTCTCAGTAGTCCTTCAGCCCGACATCTACATTAGCAGGAGGATGAGGGTGGACATTTCAGCAAGACAATGATCCAAAGACAGCCCAGGAAAATGTTTTCAGAGAAAGAAAATCAAGCTGTAGAATGGCCCAGCCAATCACCTGATCCGAATCCAATAGAGTAGTGTGTTTTTTGCTGTACATTTGCATAAGGTCAATAAATGTCCAACTTTTGAGGCTTTCAGCTACTCTCAATGCTCTCTCCGTGTCACTTTTAATCCCATAATGCATTGCGCCACTGTTTACACTCAACTTCTATATGAATGAACTGAAAACGCTGTCTGTGCTTGCAACGTGGCAGTAGGAAAGCGCAGATAACTAGCCACATTGACTGGAACACTCTTCTTCTTGTTAAATTAAGCATTTTATTGACACAATCTATTCATATTTAGAGATTCACCTCCACAATAGTTATTTTCAATGACGCAAAATTGTATTCGCTGTTAGGCCCTGCCCACACGATCACAGGTATTTTCAAAACTAACCTTTTTTTCTACACACTTTCACTGTTTGCCACATGAAAAAATAAATTAAAAATGAAAGAATCAGGTGACTAAAACTGAAACTTTCTGAAACTCTGGGCACAGCATGGTTGTGTGGACATTACAACCGGAGTTTTCGCCTCATGATGTCAGCGTGCATGCCGTTTTCTCCTTCCTGATTGGCCAACATGACTGGGTTTACACCAAACACGAAAGACGTGAAGTCTGCATGTTCGCAGCAAACACATTTATTCAGTATCAATGGCACCGCAGGGCAGTAATCCACATTTGCATTGTGCAATTTATTTGCAAAAATAGTTTATTCCCCATTTGGTGTGAACCCTCGCATAAAAGTCATATTATCGCCCCCTGTTGGTATGTGTACCCCTTACATGCATCACGTTTTTCATGTGAACAGACACTTTTAAAAATAGATACAAAAATACCCATGTACGTGTAGACATGGCCTTAGTGAATATCATCTTAAACGTTATCTAGGTAACATGAAGGTGGGAACGCCCCCTTGCCACTTTAGTCGCAACCCAGGGCAACAGGCAGCCACAAAGTCGCTGGTAGTGTGAATGAGGCTTATAATGTGTCATATGCAACACCAGTTTTTTTTTTGTTGTTGTTGTTTTTTGGTTTAGTTTGTGCAATGCATGTCATTCTCTACATCAAACCAACGTGCAAAACTCTGAATTGTGTATTGCTCATCTGAGTGGTCATCATTCCCCAACATGATCACACATATATTTCTAAGACTACTCATATATTCATAAGAGCAACATCAGAACCTTAACCATGGCTTTCACAAACAAGTGCCTGAGACCCATTTAAAGCAGTGTTTTGGGTTTAAAACAAATTGGTAAAATTGGTAAAAAAATAAATGAAAGGGAAACATGTAAATTCAGTAATTGATCATTTATCTTCCAGTTGTTTCAAACGTGCGTTGGATTCTTTCTTTTGTTGATATTTTGAGAAATGTTTGATAGTTGTTTATTTTTTCCTACCGTGTGTGTGTGTGTGTGTGTGTTGATAATTTCATTTCCAACATTCTTCAAAATATCTTCTTTTGTGTTAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATTAAGTTAATTTTAAACTTAAGGCCAGGTAAATTAATCCATGTATCTTTTGGTCATTGCATTTTCTTTTTAGAAACAGATACAAATAAATAAATAAAAATAAAATAATTTGATTAAAATGAGCCATTATTTGATTTTTGTTTTAAATCTAAAAAACAAAAATTGAAAAAGGAGGCAGAAACAAAAAAGGCCGTAAATTCTGAGACCAGATACACTGTTAATAAGGCTGCGCTCCACACAGTTCCTTCATGTTGTCCCAACACAGATCAATTAAGTTAACTTGATCAATTGTACAAATTTAAGCTTTTTTTTTTATTTGCTTGTTTGTCCATATTTTAGTAGACAAAATATTTCTTGCATAAGCTAATGAAATAATAATATTAATAATAATATTATCTATATATATATTTAGTGTAGAAACATTTTAAATGGAACAACTTTTATTTTAATGCTTTATGCAACATTTGCATTGCTTTACTGAATCCTTTTTTGAAAATAAAGTTATAATATTGTTAGAACCAGAACACTTTCTGCAATTTGACCACAAATCATTAATATAGGATCATTCGTTTGGATTAATTTCAACAAGTTTTCTCAGCATTCGAGTTCACATTATGGTCCATAGTGATTCTTATTGACATTTTTTAGGTGTAGTGAACTGTCCCTTTAAGACTGGCCAATTTATTTCATATAAACAGCATTTACAGTCAACGTTTTGTACTAAATGGATCCATTTCTGGCTTTCTCAGCAGCAGAAGTCATGATAGTTGGTAAACTTAGAGCGCAGTGAATGAGAGAGCACAACAAATCGTATTGTTTACAATACTATTAGCTGAATTAATAAAAGTAAACGGAACGGAAACCAGTGCGAGACTGATAACGGCAGCCAGAGGAGAGAATAACGTCAGATTTACTGTCCGTACCTGACTCTGCATTACACACACCTCACACAAGTGCTCATTTGTTTACTGTAATTTGATGTAAAGATGATTTAATACATACATAAATGCATATAAATGTTTGTATACATTTTAAAAAATTAAATAATAAAGACTTTTAAGGATTTAAGATGCTGATCAACCCAAAATACTCCTTTAAATTAAATTCTAGAGGCTTGTTTTTGTAACCCCGCGCTGAAGGTTTTGATGTGTTCACGTCTCCCTGCTCATTGTACTGTATTCCTCCTTCAG
Seq C2 exon
CTAAAGGCAGGACAAACGTGGAGCTGCGGGAGAAGTTCATTCTCCCAGAAGGCACCACGCAGGTGATGGCAAGCTTCCGGTACAGAGGTCGAAGGTCACGGCCGTCCTCACGAGGAGCCTCCCCTAACAGATCCAACTCCAGTCATAGCTGCGCTGCACAGAACAACCCGCTCGCACCAAACACACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858:ENSDART00000165987:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=NA C2=0.781
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(3.8=8.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]