GgaINT0079362 @ galGal3
Intron Retention
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89930255-89931303:+
Coord C1 exon
chr3:89930255-89930323
Coord A exon
chr3:89930324-89931103
Coord C2 exon
chr3:89931104-89931303
Length
780 bp
Sequences
Splice sites
5' ss Seq
TAGGTTGGC
5' ss Score
2.04
3' ss Seq
AACACCCTTCTTTGCTGCAGCTA
3' ss Score
7.63
Exon sequences
Seq C1 exon
TTCATCATCACGGGAGTAAAATGTTACGTTCGGAATCAAACTCTTCAATTACCACTCAGCCTACTATAG
Seq A exon
GTTGGCAAATCCCTCTCTTTGTCTTCTCCTCCTCTTCTCCTTTCTCTTCATTTCCTTCCCATTTATATATATATATATGTTTAACTTTTAATATGCCTCACCCATCACATTTAGCTTAATGTGTTACTACATGGGCTGGTGCTTTACGAGCTTATTGGTTTTTTTGTTGGTTTTTTTTTTGACATGCTTGAACAGTGTTTCAAAAACAATTGTCATTCACACTGACACAGTTAAATGCTAACATTTCTTGCATCTATTCTTGCGGAACATTCTCTCATATCTGTGTGTGTGTGTGTGAGTGCTTAGCCACTGATTACTTCATTACAGTTTGGAATTTGTGTTCATCATTGCATGTTGCCAAACTACATAATCTCATAGTTTTAAATAAATATATTTGCTGCTTTCCTGTAAATTTTACTAAACAATTTCTCCTGGAACATCCAAGCAAGTATTATTTATAATGAGTAGCTGTGGAGTTAGCAAAACTGCTCATCAGGTTCTGTCTGTGTATTAGTAGATGATTGATTAACAGTGATTTAGCACATTGAGCATTCCATTATCACGCTGACTTCCTTTGACAGTGGTTCATTCCTGCTGGCATAAAGTATTAGAATAAGAAATTTCTGCACATAATTCTCCCGTGTCCAAAATAAATGCATTACACAGTAATGCATTTTATTTCTTGTAAAAATGTGTTGGAATCGGCATGGCGAAAATGACAATGAACAGCTTGGTGACTGTGTGCATTTCTCACTAAATGAACACCCTTCTTTGCTGCAG
Seq C2 exon
CTAAAGGGAGGACAAATGTAGAGCTGCGTGAGAAGTTCATCTTGGCAGATGGTGCCAGTCAGAGCATGGCAGCTTTCAGACCAAGAGGCCGTAGATCACGACCCTCTTCAAGGGGTGCTTCTCCAAACCGATCTACTTCTCTGTCAAGTCAGGCTGGCCAGGCAGCTGCCCCACAAGCAGTTGCTACGAGTACACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289:ENSGALT00000026264:99
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=NA C2=0.705
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(2.5=8.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCACGGGAGTAAAATGTTACGT
R:
TGGTGTACTCGTAGCAACTGC
Band lengths:
262-1042
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]