BtaINT0053072 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3680672-3681882:+
Coord C1 exon
chr23:3680672-3680743
Coord A exon
chr23:3680744-3681682
Coord C2 exon
chr23:3681683-3681882
Length
939 bp
Sequences
Splice sites
5' ss Seq
TAGGTTGGC
5' ss Score
2.04
3' ss Seq
TCACGTGTTCCACCATCCAGCTA
3' ss Score
5.72
Exon sequences
Seq C1 exon
TTCATCATCATGGGAGTAAAATGTTACGCTCGGAATCAAACTCTTCAATCACTACTACTCAGCCTACTATAG
Seq A exon
GTTGGCGACCCCTCTCTTTGCCTCTCCCCTCCGGCCTCTCCTCTTTCCTCCTTTGACATTCTTGCTTTCGTTGTTTGTTTTCAAATAACGCGCTTCATCCATCACATATGGCTTAACTCACATCCAACTGAGCTGGTGCTTCCAAATTGAAACTCTCGACATTGGACGCCCTTCCAGTGTTGCAGACGCAGGGGTTGTGTCTGTGATCAAACACAGGCCAATGCCCCACACGCGAGGCTCTGGCGGCGCCTCAAGAGCGCGTGCACACGTGTCGGCCTGAGTGTTGAATCACAGATGACCTCCCAGATCCTCCGGTCTGGCGTTTGTTATTTTGCATGTTGTAAAACCAGGTTTTTAAGGCATAAAATAAAAATACCAGCCGCCTTCTTGAAAGTGAAAAACCCGAAAGTTTATGTGTTGTCATCATGATTAATAACCCATCTCTCATTCTATATAACTGTTCAATTAATCCTGATGGTGAAATATTGGTCTCAATCTCCTGGCCTCAGTAGTACCTACAAAAGCCATAGTCCCTGCCTCCCTGGTCCCCTTGGGGTGGGGATGGCATAGGGAAACACTGCAGGCATCAGTAGCGGGTGGATTAACGGTATTTGAGCATGAGCTTGTCATTTTCATGCTGACTCTCTCTTTAATAGTGGTTCCTCTTGCTCTGGTGTCTAGTGTTAGAAGAAGCACACTTTTATTTTTATCTTCCCCCAACTTACTTGTATCTAAAAGGAATGCATTGTAAAGGAATGCATTTGACTTTTTGTGATGCTGAGTTGGAGTTGGCATGGCAAAAAGGTGTTCTTGCAATCCTCCACGTGGTCTGTGGTGCCCGGTGGCGATTTTTCCCCTCACATACTGAGCCCCTGTTTTTTGTTTTTTTTTTCCCTTCCTTTCTTGTGTGTGTGCCTTCTCACGTGTTCCACCATCCAG
Seq C2 exon
CTAAAGGAAGGACGAACATGGAACTGCGGGAGAAGTTCATCTTGGCGGATGGAGCCACTCAGGGCATGGCTGCCTTCCGGCCGCGGGGCCGGAGATCCAGGCCCTCATCCCGGGCGGCCTCGCCCAGTCGGTCCACGTCCGTGTCCGGTCAGGCCGGCCAGGCCGCCTCCCCGCAGGTCCCTGCCAGCAGCACGCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237:ENSBTAT00000061451:97
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=NA C2=0.750
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(2.5=8.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATCATGGGAGTAAAATGTTACG
R:
CTTAGGCGTGCTGCTGGC
Band lengths:
270-1209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]