MmuINT0053638 @ mm10
Intron Retention
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34299721-34301932:+
Coord C1 exon
chr1:34299721-34299838
Coord A exon
chr1:34299839-34301860
Coord C2 exon
chr1:34301861-34301932
Length
2022 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TCCTGTGTCGTTTCTTCTAGTTC
3' ss Score
9.97
Exon sequences
Seq C1 exon
TTTGGAGACTCCCAGCAGCTGCGACTGGTTCGGATCCTGCGAAGCACAGTGATGGTTCGTGTTGGAGGCGGATGGATGGCTCTGGATGAGTTCTTAGTGAAAAATGATCCCTGCAGGG
Seq A exon
GTAAGGAGACCCTTTTGTCGAGCTGTCAGCACCATGAAAGCACAATCGTGTCGGGTGTTCCCACACTGAAAGCAAACTGAGGCCAGTCTGAGTCCCACAGCCAATCGCTCCCGATGGCTTGTAAAATGCGGTCTCTCTCTTTCATTTTTTCCACTAATGGAATACATTTCAGACAGGTAGGTAGGAAATACAGTCTGGATTTTCTGTGTGAGACCTTCGTGTCTACAGTTTCCAGAATGGATATTTCCATTCACCATGACCAAGTACTATAGAGTAAACATTTAAAAGTCAGAGTTTTATGAAATGGGGGGAGGCGGTACTTAAAAACAAGAGCAAACACTTGGAAGTTGAATAGCAAGATATTGGAAATGTAAATATTGTATTGTAGCTTTCTTTACCAGTCTAGAAGTTTTAGCTTCTAATATTCCTATTTTGTCTCTTTGAGATTATAGTATTATTTGTAATTATATTTGTGTGTGTGGTATGTGTATGTATGTGCCAATGTCCACAGAGACCAGAGGTATCAGATCCTCTAGAGTTGGAGTTGCAGGTGGTGGTGAGCTACTCATGGGCACTGAGACCAAACTCAAGCCCTCCAAGGCAAGAGCAGAGGGGTTAACTTAACCACCGAACCATCCCACCAGCCCTGGCCGTCCTGTTTCTAGTGCCTTGTAGTTATTAGATTCTTAGTTGGTCATAGGCATATCTGATTACAGTTTGCAATTAGTTGCCACCCACTCAGCAAGCACACGCTACTTTCTGACTTTACAAAAGAAAACAGTAGGATTGTGGTGACTTGTTTTAATCTGTGAGTTTCTTATAGTCCTTTAAAAACGTCTGTTCCAGCTTTGCCTGTGAGGCTGCCAAGTGGCGAGCCAAGCAGGGAGCCTTCTTTCAGTGCTGGCATCTGGAAGAGCCGTGTCCGAGTTACCGGGCCTGTCTTATCAAGGCCAGCACACCCTGCTACACAGCCACGCAGTAGCCCTGCTCTCTGTTAGCTAAAGATGCCGCATAGAGAGAAGCGAAGCAAGGCGTGGCGCTCCTGATTCATCAGCCACACTTACCAAACACTGGGGATGAGTCTGAGCAATGTGTTGTCAGGCACAAAGGACACTTAATACAAACCTAAATGGTTTTACACACCAGGGGTATATGGTGGATGTGTGTGTGTGGATGTGTGTTTCTGTGTGGGTGTGCATGTGTGTGGGTGTGTGGATGTGTGTTTCTATGTATATGTATGTATATTTGTGTATATATGTGTGTGTACATTGTGTGCATGTGTGTCTTTGTGTGTATATGTGTGTGCATGTATGTGAATATGTGTGTGAGAGTGTGGTGTGAATAAAACAAAATGAGACAGAATTGAGCACAAAATTAAAATTATGCAACCAGAAAGTGCAATCACCATAAGATGCATACGGCTGCTGCTGGTCTGACACAGCAAGCTGTTCCACAGAAAGCTTCTTAGATATAGAAAAATGATGTGCTCCAATAATACAGTAAGAACATAAAAAAGCAACCTAGCCTTTGTTGGCACTGCTACAGCATTTTTTTGTCCTATCTGCAACTGTGTTACACTTTTCTGTGACTGGAACTGCAGTGGGCTTGCTCACCACATACACATCAGTAGGGTTCTTAGACTGCACCCTTGAGATGGGTACAGCATCAGCCAGGTGATAAAGTCCCTCAGCTCCATTACAGCCCATTGTGTCATTTGGGGCGTCATGGACTGCACTGTGCAAAGAGTGCAGCCCGAGGTAAAGGCAGCTCTGAGTAGGACACCACAGTGGAGCTACAAAGCGCCCTGAGGGGGACGGGCTAGCATGGCTGGCTGAGCCTTTGCAGCTGTTTCTTCCGGGTTGAGTCGGACCTTGCAGAGCTTCTTCTCCTGATGTGCCTTCTCTCCTAACTGTGTGCTAAAAGCTGGGTCTGAGCTCCCTCTGCACATCCAACCACTGTACTTTGTTTCCTCTGCTAACAGCGTTCTTTAATGTGACCGGAATCCTGTGTCGTTTCTTCTAG
Seq C2 exon
TTCACCATCACGGGAGTAAAATGTTGCGTTCGGAATCAAACTCTTCAATTACTGCTACTCAGCCTACTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131:ENSMUST00000097785:94
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.920
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(49.4=100)
A:
NA
C2:
PF0218712=GAS2=PD(2.5=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types