DreINT0011435 @ danRer10
Intron Retention
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1573875-1575784:+
Coord C1 exon
chr13:1573875-1573992
Coord A exon
chr13:1573993-1575718
Coord C2 exon
chr13:1575719-1575784
Length
1726 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
CCAGTTATTGTTTCTTCTAGTTC
3' ss Score
7.15
Exon sequences
Seq C1 exon
TTCGGAGATTCCCAGCAGCTACGTCTGGTGCGGATCCTGCGCAGTACAGTGATGGTGCGGGTGGGTGGAGGCTGGATGGCCCTGGACGAGTTCCTGGTGAAAAATGACCCGTGCAGAG
Seq A exon
GTAATGACCAACAACTATTGGGCTTATTATTTAACACTATTTTAGACCGTAATGTTCAGATTTTGTGAGTAACAAATTTCTTGTTTTTGCTCCATATGTCGTAGACACTGTGGTTCTGTTCCAAAACCTAGCCAAGTTCCCTTTGTAGGCAGCATTTTAACACATCGCAGACACTGTGAAAGAGTCATTATACTCTTAAAAGGCTTGGTTATTGCATCAATTGGGTTAAAATGTGCCGTTTAAATTTAATTGAAAAAAGTAACCCAATGTTGGGGGATCCATATTTGAGCCAACACTGGGTTTGCGACAACCCAATGTTTATTTTAGCGTATTTTTCATCCAAAACCATTATAGTGGTGCCATAAACAACAGGTTTGATCTTTGCTTTCATTCTAAAATACCGCACTTGTTTTTCTAGGAAGGGTTGAACTTTGAGAGAGTTTAAACAAGAGAGAAAAGTGTGGAAATGTTAACGCCTGACTGAGTAAAGTGTATAAAGTGAGTGGTGAGGGGTTTTACAGCCTTAAAACATCTAGATTAATTGTTAAAAAATAAAGCTGACTACTTCGCAGATTTCGCCTTTTGAGGGTTATTTTTAGAACGTAACTCCCGCGAATAATGAGGGACAAATGTATTGCATGTGCCTTCTTCATAGACTCATATATTCACAGACTATTGAGCTCAATTCAGATTCATGTTGATTCAGTTTAGTTCAATAACAATGTCAATGTGTCCAATTTATGAACTTAAAGCAACTTTAAGCAGCTCTGAAAGTATTGTTGATTATGACCAGCTCTCAAGAAAGCATTAGCATCATTATTTAAATAAATCATTCCAGGTTCATTGTGAAAACGTAGTCCAGCGGATGTTTCTGGAGACCGCGAGATACGTCCCGGGAGGCACGTATTTTTGCAGTTTTTGTTTTTACAAATCCGCGAGAGGCTGCTGTGCGCGCTTTTTCGTGTCTCGAACGTCTCTCGCAAGCTGTTCTCGCGTCAACTTGCCAGAGGCCGCTGTCCGACTGACTGAACGAACGATTGACTGTGCGTCATGCCAATCGGCTGACACCACCCTCCTCCTTCCTTCCTTAAACCCAAGCAATAATTTTATTATAATAATTTTTTCCACAACGTTTTTGGATTTCATCACGTTCTCGCCCCGTCATGAACCCGTTCACTTTATTTTCTGGATTCTGTTTTTGTCTTACCAGATTTCTGATCTGATTTCGTTTGCTTGAAAAAACGAAATGCAGCCATACATACCTCCCGGGACGTATCATGCGGTCTCCAGAAGCGTCCGCGGGACTACGTTTTCAGAATGAGCCTGGGTTGAAGAATAAATTCAGTTTTTGTGCATTTTTTGTTGCTGAAAGTAGTCAGTGAAGACAAATGAGTATTAAAGGCTGCACCAACTCCATCTGGTGAAAAAACATAGTATTGCAGCTCACTAGGTTTTGAACCAGAGCCTACCATATGTAAAATGACTGCAAAATTCAGTTCCCCATTATCAAAGCACTGTAATATTCAGCAGGGGAACATGCTGTTGGGTGTTCATAATGAATTGTAGGGCTGTAATAATGTTCGGTGGCTGAATTGTGTCTTCCTGCACTCTAATCGGCTGTGTGTGAGATTCTTGAAGCTTGCTGGTCTCTTCCCATGACGCTTTTCTTTCAGAGTTTCCCTTTTCCTGCTGCTTTGTTAGTGAACCCAGTTATTGTTTCTTCTAG
Seq C2 exon
TTCACCACCACGGGAGTAAAATGTTGCGCTCGGAATCAAACTCTTCAATTACTCAGTCTCCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858:ENSDART00000165987:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.891
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(75.0=100)
A:
NA
C2:
PF0218712=GAS2=PD(3.8=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGAGATTCCCAGCAGCTA
R:
ATAGGAGACTGAGTAATTGAAGAGTT
Band lengths:
182-1908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]