BtaINT0053071 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3679404-3680743:+
Coord C1 exon
chr23:3679404-3679521
Coord A exon
chr23:3679522-3680671
Coord C2 exon
chr23:3680672-3680743
Length
1150 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TCCTGTGTCATTTCTTCTAGTTC
3' ss Score
9.23
Exon sequences
Seq C1 exon
TTTGGAGACTCCCAGCAACTTCGGCTCGTCCGCATCCTGCGCAGCACCGTGATGGTTCGCGTTGGAGGTGGATGGATGGCGCTCGATGAGTTCCTAGTGAAAAACGACCCTTGCAGGG
Seq A exon
GTAAGGAGACGCTTACCGTCAGGGTAGTCACCCCATGCAAGTATGTCCATCCTGTGTTATTTTCCAGCATCAAAAACATACTGGGGTGTACACCTGAATCTATCACAGCATTGTTCATCAACTCTGCTCCAGTGTATCAAGTAAAACTATACTCCCAGTACATAAAGTCAAACGTTTTTTAAAAAGTTAGCTAAAAATAACTTACTGAGGCTCATTTTGATCATATATTATTGGGTTGGCTAAAAAGTTCTCTTGGGTTTGCCCATAAGACATTACGGAAAAACCCAAACGAACTTTTTGGCCAGCCCAATATGATGAATGTTCACATTGGTCTGTCAGCCTGAAGTTCCCAAAGAACTTGGGGCAGTTGTGTAAACTGTGTTCCTCGCTCTTTTTTTTTTTTTTTTTTTTTCCACTTCTCCTGGATAGCTGGGAGACTGGGGGATGGGAAACACTAGAATGTATTTTTCTGTATGAGACACCCCACCATCTGCAGTTTTCAGAATGAGCGATTCTACCAGCCAAGGACAGGATTTCCTCTGTCATTGAAAAGCAAAGTAAGAGGAAAGAAAACCGAGTGATGAAGATTGAAGATAGTGTACAGGAGAAGTTTGAAAGCAAAAGTGTTTCTGAAATTAGGGGGAGGTGAGGAAAGCAGTATTGAAAAAAATGTTTAAACAATAAGCTCCTGATTTGACTCTGAATTTTGAAGTTACAGATCAGCGCCCTAAGAAGGTGCACACACACCGCACCATAGCACTCAGGTGGGTGGGACTGGGCTCGGGTGGCCAGTCCGCGGGCCTCCCTGCTGGCCACCGTGGGTGATGACGCCTAAAGGAGTGAAGTAAAAGCAAAGGCGCCCTTTTGTTTTGTATTTGGAAACAGTGCAGCCTAAGGTAGCACAGCTCCACTTATGAAACAAGGGAGAAGGCCGAGTGCTCTGTGCGGTCGCCTGAGAAAGGCAGCTTGCCTGGGGCAGGGTCTTCAGGTGCGGTTTTCCTCCCGAGTCAGCCCTGTGCGTGCTTCTCTTCTAAACTGTGCACCAAGGCCCGACCTGAGAAGCCTTGGCGTAGTCGACCACTGTGCTGTGTTTCTTCTTCTGCTAACAGTTCTCTTGAATGTGATTGATATCCTGTGTCATTTCTTCTAG
Seq C2 exon
TTCATCATCATGGGAGTAAAATGTTACGCTCGGAATCAAACTCTTCAATCACTACTACTCAGCCTACTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237:ENSBTAT00000061451:96
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.920
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(49.4=100)
A:
NA
C2:
PF0218712=GAS2=PD(2.5=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGACTCCCAGCAACTTC
R:
AGGCTGAGTAGTAGTGATTGAAGAGT
Band lengths:
182-1332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]