RnoEX0030039 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:37907635-37911079:-
Coord C1 exon
chr9:37910962-37911079
Coord A exon
chr9:37908743-37908814
Coord C2 exon
chr9:37907635-37907837
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGTCGTTTCTTCTAGTTC
3' ss Score
9.97
5' ss Seq
TAGGTCGGC
5' ss Score
2.81
Exon sequences
Seq C1 exon
TTTGGAGACTCCCAGCAGCTGCGACTGGTTCGGATCCTGCGAAGCACCGTGATGGTCCGTGTTGGAGGTGGATGGATGGCTCTGGATGAGTTCTTAGTGAAAAACGATCCGTGCAGGG
Seq A exon
TTCATCATCACGGGAGTAAAATGTTGCGTTCGGAATCAAACTCTTCAATTACTGCTACTCAGCCTACTCTAG
Seq C2 exon
CCAAAGGAAGGACCAACATGGAGCTGCGGGAGAAGTTCATCTTAGCGGACGGGGCCAGCCAGGGTATGGCTGCCTTCCGACCACGAGGCCGCCGATCTCGGCCTTCGTCGAGAGGAGCTTCCCCCAACAGATCCACTTCCGCATCCAGTCACGCCTGCCAGGCAGCCTCCCCACAGGTGCCTGCTGCCGCCAGCACACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.920 C2=0.676
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(49.4=100)
A:
PF0218712=GAS2=PD(2.5=8.0)
C2:
PF0218712=GAS2=PD(2.5=2.9)
Main Inclusion Isoform:
ENSRNOT00000044452fB4509
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAACGATCCGTGCAGGG
R:
CTGGATGCGGAAGTGGATCTG
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]