GgaEX0024006 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89928018-89931303:+
Coord C1 exon
chr3:89928018-89928135
Coord A exon
chr3:89930255-89930323
Coord C2 exon
chr3:89931104-89931303
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGTCATTTTTTCTAGTTC
3' ss Score
9
5' ss Seq
TAGGTTGGC
5' ss Score
2.04
Exon sequences
Seq C1 exon
TTTGGTGACTCTCAACAACTACGCCTTGTTCGTATCCTAAGAAGTACGGTCATGGTTCGTGTTGGAGGTGGCTGGATGGCACTTGATGAGTTCTTAGTGAAAAATGATCCTTGCAGGG
Seq A exon
TTCATCATCACGGGAGTAAAATGTTACGTTCGGAATCAAACTCTTCAATTACCACTCAGCCTACTATAG
Seq C2 exon
CTAAAGGGAGGACAAATGTAGAGCTGCGTGAGAAGTTCATCTTGGCAGATGGTGCCAGTCAGAGCATGGCAGCTTTCAGACCAAGAGGCCGTAGATCACGACCCTCTTCAAGGGGTGCTTCTCCAAACCGATCTACTTCTCTGTCAAGTCAGGCTGGCCAGGCAGCTGCCCCACAAGCAGTTGCTACGAGTACACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.917 C2=0.705
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(49.4=100)
A:
PF0218712=GAS2=PD(2.5=8.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGATGGCACTTGATGAGT
R:
TGGAGAAGCACCCCTTGAAGA
Band lengths:
173-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]