DreALTD0001751-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000063182 | RC3H1 (2 of 2)
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr2:7313412-7317838:-
Coord C1 exon
chr2:7317738-7317838
Coord A exon
NA
Coord C2 exon
chr2:7313412-7313854
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
GATTCTCCCTTTTGTTTCAGGTT
3' ss Score
11.43
Exon sequences
Seq C1 exon
AACTCCCGAGCTACTTCGGCAACCCGTTATAACGGTCGACATGGCGACCAAGGAAATTATCAAGCGTTTTCTTAAGGAAAGATGAAGATAGTCGATACTCA
Seq A exon
NA
Seq C2 exon
GTTTCAGGTTTCACACCATGTGATGATCACCCGGGACGTGTGAACTTATTTAAGAACTCCTGTGTTCAGAAGATTTTTTGATTCCAGTGGAATCTTTCATTCCCCCCTCCATCTATTATTTCCTTTTTTGTTAAATGAAACAACACCCAGTCACACACACACCCAGGAGAATCCCCCCCACCCTTGTTTACATGTAGAACAACCCCGCTACGATGCCTGTACAAGCTCCACAATGGACAGAGTTTTTGCTGTGTCCGATATGCACCCAGACGTTCGAGGAGACGGTGCGTCGGCCCATCAGTCTGGGCTGTGGCCACACCGTTTGCAAGATGTGCCTCAACAAGCTGCACCGCAAGGCCTGCCCCTTTGACCAGACGGCCATCAATACTGACATTGAACAGCTGCCCGTCAACTCGGCCTTGCTACAGCTGGTCGGGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063182-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0136316=FYVE=PU(68.9=92.2),PF052906=Baculo_IE-1=WD(100=74.0),PF134451=zf-RING_UBOX=WD(100=54.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACATGGCGACCAAGGAAAT
R:
CACGTCCCGGGTGATCATCA
Band lengths:
105-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]