DreALTD0002055-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000089190 | TANC1 (2 of 2)
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr9:52478547-52478777:-
Coord C1 exon
chr9:52478748-52478777
Coord A exon
NA
Coord C2 exon
chr9:52478547-52478638
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGTA
3' ss Score
9.7
Exon sequences
Seq C1 exon
GCTACAGAACGTCTCCTTATGATCGAACAG
Seq A exon
NA
Seq C2 exon
GTAACGCAGCCTGGGCAATGGCCACATCCAAACCGGACATCCTGATCATCCTCCTGCAGAAGCTGATGGAAGAGGGAAACCTGCTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089190-33-34,34-34-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(4.2=27.3)
A:
NA
C2:
PF127962=Ank_2=PD(2.8=6.5),PF134141=TPR_11=PU(16.2=41.9)
Main Inclusion Isoform:
ENSDART00000160120fB759
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAACGTCTCCTTATGATCGA
R:
TCAGCTTCTGCAGGAGGATGA
Band lengths:
93-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]