DreEX0008656 @ danRer10
Exon Skipping
Gene
ENSDARG00000089190 | TANC1 (2 of 2)
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr9:52478547-52483323:-
Coord C1 exon
chr9:52483191-52483323
Coord A exon
chr9:52478748-52478777
Coord C2 exon
chr9:52478547-52478638
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTTCACTAAACCCTGGTCAGGCT
3' ss Score
2.32
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTTCATTATCTGGTGGAGAAGGGTGCTGTGATCGAGCATGTGGATTACAGTGGGATGAGGCCGCTGGATCGAGCCATCGGCTGCAGAAACACCTCAGTAGTGCTGACTTTACTGAAGAAAGGAGCAAAACTAG
Seq A exon
GCTACAGAACGTCTCCTTATGATCGAACAG
Seq C2 exon
GTAACGCAGCCTGGGCAATGGCCACATCCAAACCGGACATCCTGATCATCCTCCTGCAGAAGCTGATGGAAGAGGGAAACCTGCTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089190_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(61.1=100)
A:
PF127962=Ank_2=PD(4.2=27.3)
C2:
PF127962=Ank_2=PD(2.8=6.5),PF134141=TPR_11=PU(16.2=41.9)
Main Inclusion Isoform:
ENSDART00000160120fB759
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCAGAAACACCTCAGTA
R:
TCAGCTTCTGCAGGAGGATGA
Band lengths:
121-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]