MmuEX1025465 @ mm10
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59817485-59820285:+
Coord C1 exon
chr2:59817485-59817670
Coord A exon
chr2:59819439-59819485
Coord C2 exon
chr2:59820207-59820285
Length
47 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTACTCCCTCCTTAGATC
3' ss Score
11.22
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGGACCACTTGGATAAGAAGGGCCAGTGTGCACTCGTCCACAGCGCACTGAGGGGCCACAGTGACATTCTCCAGTACCTGCTGAACTGTGAGTGGTCGGCAGGCCCTCCCCAGCCTGGCACCCTGAGGAAGAGCCAAGCCCTGCAGCAGGCACTGACAGCCGCCGCCAGCATGGGCCACAGCTCG
Seq A exon
ATCCTGATGCCTCCTGTCCAATCCTAAGAATGCTGTGGTTGTGCCAG
Seq C2 exon
GTCGTCCAGTCCTTGCTGGGAATGGCAGAGGAACATGAAATCGAAGTCAACGGCACCGACACGTTGTGGGGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-'78-55,'78-54,79-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(39.4=59.7),PF136371=Ank_4=PU(21.1=19.4)
A:
NO
C2:
PF136371=Ank_4=FE(45.6=100)
Main Inclusion Isoform:
ENSMUST00000037526fB17857
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGAACTGTGAGTGGTC
R:
CATTCCCAGCAAGGACTGGAC
Band lengths:
133-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types