DreEX0008644 @ danRer10
Exon Skipping
Gene
ENSDARG00000089190 | TANC1 (2 of 2)
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr9:52660052-52751628:-
Coord C1 exon
chr9:52751544-52751628
Coord A exon
chr9:52676697-52676882
Coord C2 exon
chr9:52660052-52660147
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTGTGTGTGATCAGGGG
3' ss Score
9.57
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
CAGAGCAGTCATTCCTGGAGTCACGCCATGTTCAAGGCCGTGCTGAAGAAGAGCAGAGATGGTGGGAAAAACAAGAAGGATGCAG
Seq A exon
GGGAGCCGTTGGTGCTCAGTGGCCAGTGGAGGTGTGCTGGCGGTGGCATGCCGGATCCGTATCCGTCTGCAGATGAAGGCCTCAGACTGGGTTTTTCTAAAGGAGTCTCTATGTCTCTGCCATCGTCTCCTCTGCTGCCCCGACACACATACGTGATGGCAGCTCGACCCTGCAAGAAGTCTCCAG
Seq C2 exon
GATTGGTTAGAAAGCCCAAATATGTGGAGAGTCCTCGTATTCCTGGAGATGTGTGTGCGGCGTCGCTGAAGAAGGTGCCTGATTCTGCTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089190-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.545 C2=0.455
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGTCATTCCTGGAGTCA
R:
GCAGTAGCAGAATCAGGCACC
Band lengths:
178-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]