DreALTD0002056-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000089190 | TANC1 (2 of 2)
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr9:52628675-52634222:-
Coord C1 exon
chr9:52634116-52634222
Coord A exon
NA
Coord C2 exon
chr9:52628675-52628846
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
ATCTGTGTGTGTGTCTGCAGTGT
3' ss Score
9.17
Exon sequences
Seq C1 exon
GCTCCTCCTCCTCCACTCAGGAGTTGATGACACGCTTGGGCTTCTTGCTGGGCGAAGGCATCCCGGGCTCCACACACATACCTATGGACGGCAAGAATGACAAAAAG
Seq A exon
NA
Seq C2 exon
TGTCCAGTGAATCAGGGCATCAGTCCGTGCTCCACCCTGACCAGCAGCACAGCGTCTCCCAGTACAGACAGTCCCTGCTCCACTCTGAACAGCAGCGGCCGGCCAGGGCTCACAGCCGTCTGCATCACCAGCCCCAGCTCCACCCTCGACAGCAAAGACAGCGGCATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089190-4-5,5-5,6-5-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.586
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACACGCTTGGGCTTCTT
R:
CTGTCTTTGCTGTCGAGGGTG
Band lengths:
243-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]