DreALTD0002056-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000089190 | TANC1 (2 of 2)
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr9:52628675-52634222:-
Coord C1 exon
chr9:52634116-52634222
Coord A exon
chr9:52633983-52634115
Coord C2 exon
chr9:52628675-52628846
Length
133 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
ATCTGTGTGTGTGTCTGCAGTGT
3' ss Score
9.17
Exon sequences
Seq C1 exon
GCTCCTCCTCCTCCACTCAGGAGTTGATGACACGCTTGGGCTTCTTGCTGGGCGAAGGCATCCCGGGCTCCACACACATACCTATGGACGGCAAGAATGACAAAAAG
Seq A exon
GTATTTACCACAGCTGCAGCCGGAGCGAGATGCAGAAAAGCGCAGGGATTAAAGCCGCGTGTGTGTGCCGTCTGTCAGTGCGCGGTGCGATGAAGAGCGTTTGCGAGCAGGAGTGTGTGTGTGCGCAACCACA
Seq C2 exon
TGTCCAGTGAATCAGGGCATCAGTCCGTGCTCCACCCTGACCAGCAGCACAGCGTCTCCCAGTACAGACAGTCCCTGCTCCACTCTGAACAGCAGCGGCCGGCCAGGGCTCACAGCCGTCTGCATCACCAGCCCCAGCTCCACCCTCGACAGCAAAGACAGCGGCATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089190-4-5,5-5,6-5-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.586
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACACGCTTGGGCTTCTT
R:
CTGTCTTTGCTGTCGAGGGTG
Band lengths:
243-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]