DreALTD0002117-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000078362 | TNC (2 of 2)
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr5:5311365-5338812:-
Coord C1 exon
chr5:5338712-5338812
Coord A exon
NA
Coord C2 exon
chr5:5311365-5311902
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTATGTCTTTGCTTTTTTAGAGA
3' ss Score
9.85
Exon sequences
Seq C1 exon
TCACTGTAACGCTGGGCTGATGCTCTTTTTTTATTCTGGCCGTCCACACCTGATTTGCACGGCTGCAGGGAGCTGTCTGGAAGATCCATTCATTGCTACAG
Seq A exon
NA
Seq C2 exon
AGACACCACCACTCTGTCCAGTCCTCAGCATTACCCTGAGTAGTTCCTGCCAAGACAAGCATCCATCAGTGCAGAAACATGTCTTCAAGAGGTCTGACATTGAGCTGTTTGCTTTTAATCACCTTGATGGCTCTAAATCACGCCGGCCTTGTAAAGAAGCTGATCAGACAGCGTCGGGAAGCTCTGAATGTTCCCGGCATCCACAATGTTACCCTTTCCAACTCCTCCAGACCAGTTATTTTCAACCATGTCTACAACATTAAAGTCCCGGGCAGCCCTCTGTGCTCGGTGGATTTGGACGCTCCTGAAGGATCAGATGTGGAGCTGAGGGATGCACCATCTGAGCACAGTGTGGATGGTAGTAATCAGATTGTTTTTACACACCGGATCAACATCCCCAAACAGGCATGTGGCTGTACGGACGGCCTGCCGGATTTGAAGGATCTCCTGAGTCGACTGGAGATGTTGGAGGGTGAAGTGTCCACATTGAGGGAACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078362-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.058
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGCTGTCTGGAAGATCC
R:
CATTGTGGATGCCGGGAACAT
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]