DreEX0008929 @ danRer10

Exon Skipping

Gene

ENSDARG00000078362 | TNC (2 of 2)

Description

tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]

Coordinates

chr5:5306215-5338943:-

Coord C1 exon

chr5:5338712-5338943

Coord A exon

chr5:5311365-5311902

Coord C2 exon

chr5:5306215-5307528

Length

538 bp

Sequences

Splice sites

3' ss Seq

TTATGTCTTTGCTTTTTTAGAGA

3' ss Score

9.85

5' ss Seq

CAGGTAAAC

5' ss Score

7.82

Exon sequences

Seq C1 exon

CTCTCATATTAAAGAGGTGTAGGGCTTTCATCCTCACACACACACGGCGAGCTGAAGGCTGTGTGGAATAAATCACAGACGCTCTCAGATCGTGGAGACAGACAGACGGAGGTCTAGAAAGCTGGACGTCTTCACTGTAACGCTGGGCTGATGCTCTTTTTTTATTCTGGCCGTCCACACCTGATTTGCACGGCTGCAGGGAGCTGTCTGGAAGATCCATTCATTGCTACAG

Seq A exon

AGACACCACCACTCTGTCCAGTCCTCAGCATTACCCTGAGTAGTTCCTGCCAAGACAAGCATCCATCAGTGCAGAAACATGTCTTCAAGAGGTCTGACATTGAGCTGTTTGCTTTTAATCACCTTGATGGCTCTAAATCACGCCGGCCTTGTAAAGAAGCTGATCAGACAGCGTCGGGAAGCTCTGAATGTTCCCGGCATCCACAATGTTACCCTTTCCAACTCCTCCAGACCAGTTATTTTCAACCATGTCTACAACATTAAAGTCCCGGGCAGCCCTCTGTGCTCGGTGGATTTGGACGCTCCTGAAGGATCAGATGTGGAGCTGAGGGATGCACCATCTGAGCACAGTGTGGATGGTAGTAATCAGATTGTTTTTACACACCGGATCAACATCCCCAAACAGGCATGTGGCTGTACGGACGGCCTGCCGGATTTGAAGGATCTCCTGAGTCGACTGGAGATGTTGGAGGGTGAAGTGTCCACATTGAGGGAACAGTGCGGTGCTGAGTCTACATGCTGTAGTGCACAGGTCACAG

Seq C2 exon

GTGCAATAGGAACGAAGCCCTTCTGCAGTGGACATGGAAACTACAGCACTGAGACCTGCGGATGTGTCTGTGCTCCCGGATGGAAAGGCCTAAACTGCACCATTCCCGACTGTCCTGGAGACTGTAGCGATCAAGGCCGTTGTGTTAACGGGAAGTGTGAGTGTTTCGAAGGCTTCACCGGTGACGACTGCAGCACTGATGCCTGTCTGATTGACTGCGGTGATAATGGTCGTTGCCTTAACGGGAAGTGCGTTTGCAGTGAGGGTTTCTCCGGGGAATATTGCACAGAGTCGGATTGCCTTAACAACTGTTTGGGACGCGGCCGCTGTGTGGATGGCGAATGTGTTTGCGATGAACCCTGGACTGGATTTGATTGCTCTGAACTCATCTGTCCGAACGATTGCTACGATCGCGGACGATGCGAAAACGGGACTTGTTACTGTGACAGAGGATTCACCGGAGAAGATTGCGGGGCTCTTGCTTGTCCGAATGATTGCTCT

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000078362-'0-2,'0-1,4-2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available

Features

Disorder rate (Iupred):

C1=NA A=0.058 C2=0.000

Domain overlap (PFAM):

C1:

NA

A:

NO

C2:

PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=7.1),PF079748=EGF_2=WD(100=6.6),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=7.1)

Main Inclusion Isoform:

ENSDARP00000098154