GgaEX6014923 @ galGal4
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
tenascin precursor [Source:RefSeq peptide;Acc:NP_990787]
Coordinates
chr17:2679942-2707385:-
Coord C1 exon
chr17:2707202-2707385
Coord A exon
chr17:2682171-2682763
Coord C2 exon
chr17:2679942-2681255
Length
593 bp
Sequences
Splice sites
3' ss Seq
ACTGTTCCTTCTTGTTTCAGAGA
3' ss Score
11.15
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGCTGATCTGACCAGTGTGCCGCACTGTCAAACCCTCCTTTCACACACGCGCGCACCAAATGAGACGGCACAACTTCTCTGAGTTTTGACAGGACGGCGAGGAATCCGGGAGCCGACAGCTGGCTGCAGTACCTCTGCTTCGTGGAGGCTGCCCGTGGCAGGATCTGATCCGTCAGCCCACACG
Seq A exon
AGAATAAGTGTGCCAAGAAAGGAAAGGAAACTCAACTTAGTTTGAACTGGCTCTCAAATTTCTCCTCCAGTCTACAAAGGCCAAACAAATATAAGACTCCATCAGCTTTGAAAAGGAACTGAGCACTACAATGGGACTCCCTTCCCAGGTTTTGGCCTGTGCCATCTTAGGTTTGCTGTACCAGCATGCCAGTGGTGGGCTCATCAAGCGAATTATCCGGCAGAAGCGGGAGACTGGGCTCAATGTGACCTTACCAGAGGATAATCAGCCTGTGGTTTTCAATCATGTCTACAACATCAAGCTGCCTGTTGGCTCCCTTTGCTCTGTGGACCTGGACACAGCAAGTGGGGACGCAGACCTGAAGGCAGAAATTGAGCCTGTCAAGAATTACGAGGAGCATACGGTGAATGAGGGGAACCAGATTGTCTTCACGCACCGCATCAACATTCCCCGCCGGGCCTGTGGCTGTGCGGCTGCCCCAGACATCAAGGACCTGCTGAGCAGACTGGAGGAGCTGGAGGGGCTGGTATCCTCCCTCCGGGAGCAGTGTGCCAGCGGGGCTGGATGCTGTCCTAATTCCCAGACAGCAGAAG
Seq C2 exon
GTCGCCTGGACACGGCCCCCTATTGCAGTGGGCACGGCAACTACAGCACCGAGATCTGTGGCTGCGTGTGCGAGCCAGGCTGGAAAGGCCCCAACTGCTCCGAACCGGCCTGCCCACGCAACTGCCTCAACCGCGGCCTCTGCGTGCGGGGCAAATGCATCTGCGAGGAGGGCTTTACCGGCGAGGACTGCAGCCAGGCTGCCTGCCCGTCTGACTGCAACGACCAAGGCAAGTGTGTGGATGGGGTGTGCGTCTGCTTCGAGGGCTACACGGGCCCGGACTGCGGCGAGGAGCTCTGCCCCCACGGGTGTGGCATTCACGGGCGCTGTGTGGGTGGACGCTGTGTGTGCCACGAGGGCTTCACTGGCGAGGACTGCAATGAGCCTCTGTGCCCCAACAACTGTCACAACCGCGGGCGCTGTGTGGACAACGAGTGCGTCTGCGATGAGGGCTACACGGGAGAGGACTGCGGCGAGCTGATTTGCCCCAATGACTGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-'3-3,'3-2,6-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF126612=hEGF=WD(100=3.0),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACTGTCAAACCCTCCTTT
R:
GTAAAGCCCTCCTCGCAGATG
Band lengths:
342-935
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]