RnoEX0092211 @ rn6

Exon Skipping

Gene

ENSRNOG00000058645 | Tnc

Description

tenascin C [Source:RGD Symbol;Acc:621057]

Coordinates

chr5:79846787-79874671:-

Coord C1 exon

chr5:79874302-79874671

Coord A exon

chr5:79849368-79849949

Coord C2 exon

chr5:79846787-79848196

Length

582 bp

Sequences

Splice sites

3' ss Seq

TTCTTTTTCTTTATTTATAGATC

3' ss Score

10.33

5' ss Seq

AAGGTAGGC

5' ss Score

10.08

Exon sequences

Seq C1 exon

GCAAATGGTCCGTTAGCTGGCTGAGCGCCTGGAGTGAGTGCGTCTTTCATGAGCTAACCCTGTTCCGCTGGGAGGGCTGTGCCTTTAACTCACCAACTGAAAAAAAAAAAAAAGTGGGAAAGGATGTCTGGAGGCGAGGCGTCCCATTACAGAGGAAGGAGCTCCCTATATAAGCCAGCCAAAGCTGGCTGCTCCAGCCACAGCCTGCCTACTGTCACGCGTCTCTCCCGCGCGCTGAACACACACCCTAGCCTCTGGTGGGCACAGACAGTGGCTGGGGAGACGCTAGGGACTGCGCGCTTGGGAACTCGCCCAGGTACTTCTCTGAGCCGGTGCACCCAGAGACCTTGATTTCTCCGACCTGGAATAG

Seq A exon

ATCTTTCTTCCATGAAGACTGGAGACGTTCAACTGTATTCTTTTAAGTACATCTAAATACCAAATTCTACTGGAAGTTCAGGCACCCTACAGATCTAGAGACACCTAGCCAATCCAACCTCTACCATGGGGGCCGTGACCTGGCTATTGCCAGGCATCTTCCTAGCTTTGTTTGCCCTCACTCCTGAAGGTGGGGTCCTCAAGAAAGTCATCAGGCACAAGCGAGAGAGTGGGCTGAACTTGACCTTGCCAGAGGAGAATCAGCCAGTGGTGTTCAACCATATCTACAACATCAAGTTGCCCATGGGTTCTCAGTGCTCAGTGGATCTAGAGTCAACGAGTGGAGAGAAAGACCTGAGCCCCACACCAGAGTCCAGTGGAAGCTTCCAGGAGCATACAGTGGATGGGGAAAATCAGATTGTGTTCACACACCGCATCAACATCCCTCGTCGGGCCTGTGGCTGTGCCGCAGCTCCAGATGTGAAGGAGCTCCTGAGCAGACTGGAGGAACTGGAGATGTTGGTATCTTCTCTAAGGGAGCAGTGCACCATGGGTACAGGCTGTTGCCTCCAACCTGCAGAAG

Seq C2 exon

GCCGTCTGGACAGCAGGCCCTTCTGCAGCGGCAGGGGTAACTTCAGTGCTGAAGGTTGTGGCTGTGTCTGTGAACCAGGCTGGAAAGGTCCCAACTGCTCTGAGCCTGAATGCCCTGGAAACTGTAATCTCAGAGGCCAGTGCCTTGATGGACAGTGTATCTGTGACCAGGGTTTCACTGGGGAAGACTGCAGCCAGCTAGCCTGTCCCAATGACTGCAATGACCAGGGCAAGTGTGTGAATGGGGTCTGTGTGTGCTTCGAAGGCTATGCCGGCCTTGACTGTGGCCTGGAAGTCTGCCCAGTGCCGTGCAGCGAGGAACACGGGATGTGTGTGGATGGCAGGTGTGTGTGCAAAGATGGCTTTGCTGGTGAAGACTGCAATGAGCCCCTTTGCTTCAACAACTGCAACAACCGTGGGCGGTGTGTGGAGAACGAATGCGTCTGTGATGAGGGCTTCACGGGCGAAGACTGCAGCGAGCTCATTTGCCCCAATGACTGC

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000058645-'0-6,'0-4,5-6

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available

Features

Disorder rate (Iupred):

C1=NA A=0.144 C2=0.000

Domain overlap (PFAM):

C1:

NA

A:

NO

C2:

PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.9),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7)

Main Inclusion Isoform:

ENSRNOP00000071884