MmuEX1026372 @ mm10
Exon Skipping
Gene
ENSMUSG00000028364 | Tnc
Description
tenascin C [Source:MGI Symbol;Acc:MGI:101922]
Coordinates
chr4:64016831-64047015:-
Coord C1 exon
chr4:64046749-64047015
Coord A exon
chr4:64020144-64020725
Coord C2 exon
chr4:64016831-64018240
Length
582 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCCTTTATTTATAGATC
3' ss Score
9.82
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGAAAGGATGTCTGGAGGCGAGGCGTCCCATTACAGAGGAAGGAGCTCCCTATATAAGCCTGCCAAAGCTGGCTGCTCCGGCCACAGCCTGCCTACTGTCACGCGTCTCTCCCGCGCGCAGACACACACCCTAGCCTCTGGTGGGCACAGACAGTGGCTGGGAAGACGCTAGGGACCGCGCGCTTGGGAACTCGTTGTGGCTTAACCCAGGTACTTCTTCACGGAGCTGGTGCACCCAGAGACTTTGCTTTTCCCGACCTGGAAAAG
Seq A exon
ATCCTTCTTCCAAGAAGATTGGGGACATCCAACTGTATTCCTTTGAGTACATCTAAATACCAAACTCTACTGGGAGTTCAGGCACCCTACAGATCTAGAGACACCTAGCCAGTCCAACCTCCACCATGGGGGCCGTGACCTGGCTACTGCCAGGCATCTTTCTAGCTTTGTTTGCCCTCACTCCCGAAGGTGGGGTCCTCAAGAAAATCATCAGGCACAAGCGAGAGAGTGGGCTAAACATGACCCTGCCAGAAGAGAATCAGCCAGTGGTGTTCAACCATATCTACAACATCAAGTTGCCCATGGGTTCCCAATGCTCAGTGGATCTGGAGTCAGCGAGTGGGGAGAAAGACCTGACCCCCACGCCAGAGTCCAGTGGGAGCTTCCAGGAACATACAGTGGATGGGGAAAACCAAATTGTATTCACACACCGCATCAACATCCCCCGCCGGGCCTGTGGCTGTGCTGCAGCTCCAGATGTGAAGGAGCTCCTGAGCAGGCTGGAGGAGCTGGAGTTGCTGGTATCGTCTCTAAGGGAGCAGTGCACCATGGGTACAGGCTGTTGCCTCCAACCTGCAGAAG
Seq C2 exon
GTCGTCTGGACACCAGGCCCTTCTGCAGCGGACGGGGCAACTTCAGTGCAGAAGGCTGCGGCTGTGTCTGTGAACCAGGCTGGAAAGGCCCCAACTGCTCTGAGCCTGACTGCCCTGGGAACTGTAATCTCAGAGGCCAGTGCCTTGACGGCCAGTGTATCTGTGACGAGGGTTTCACTGGGGAAGACTGCAGCCAGCTGGCCTGTCCGAACGACTGCAATGACCAGGGCAGGTGTGTGAACGGGGTCTGTGTGTGCTTCGAAGGCTATGCCGGCCCTGACTGTGGCCTGGAAGTCTGCCCAGTGCCCTGCAGCGAGGAACACGGGATGTGTGTGGATGGCAGGTGTGTGTGCAAAGATGGCTTTGCGGGTGAGGACTGCAACGAGCCCCTTTGCCTCAACAACTGCTACAATCGTGGGCGGTGTGTGGAGAACGAGTGTGTCTGCGACGAGGGCTTCACTGGCGAGGACTGCAGTGAGCTCATTTGCCCCAACGACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028364-'0-6,'0-5,1-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.163 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.9),PF126612=hEGF=WD(100=2.8),PF0045114=Toxin_2=WD(100=6.2),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGGAACTCGTTGTGGCTT
R:
GCATAGCCTTCGAAGCACACA
Band lengths:
356-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types